/usr/share/ugene/data/DBXRefRegistry.txt is in ugene-data 1.9.8+repack-0ubuntu4.
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AceView/WormGenes|http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/av.cgi?exdb=AceView&db=36a&term=%1||AceView Worm Genome
AFTOL|http://aftol.biology.duke.edu/pub/primers/getPrimersByAFTOLID?aftol_id=%1||Assembling the Fungal Tree of Life
ASAP|http://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=%1||A Systematic Annotation Package for Community Analysis of Genomes
ATCC|||American Type Culture Collection database
ApiDB|http://eupathdb.org/eupathdb/showSummary.do?questionFullName=GeneQuestions.GeneBySingleLocusTag&myProp%28single_gene_id%29=%1||Apicomplexan Database Resources
ApiDB_CryptoDB|http://www.cryptodb.org/cryptodb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&project_id=&primary_key=%1||Cryptosporidium Genome Resources
ApiDB_PlasmoDB|http://www.plasmodb.org/plasmo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&project_id=&primary_key=%1||Plasmodium Genome Resources
ApiDB_ToxoDB|http://www.toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&project_id=&primary_key=%1||Toxoplasma Genome Resources
ATCC(in host)|||American Type Culture Collection database
ATCC(dna)|||American Type Culture Collection database
Axeldb|http://indigene.ibaic.u-psud.fr/cgi-bin/ace/searches/basic/default?class=Any;query=%1||A Xenopus laevis database
BDGP_EST|||Berkeley Drosophila Genome Project EST database
BDGP_INS|||Berkeley Drosophila Genome Project database -- Insertion
BHB|||BioHealthBase
BOLD|||Barcode of Life database
CDD|http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=%1||Conserved Domain Database
CCDS|http://www.ncbi.nlm.nih.gov/projects/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&DATA=%1&ORGANISM=0&BUILDS=CURRENTBUILDS||The Consensus CDS (CCDS) project is a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality.
dbEST|http://www.ncbi.nlm.nih.gov/sites/entrez?db=nucest&term=%1&pmfilter_MDatLimit=10+Years||EST database maintained at the NCBI.
dbProbe|http://www.ncbi.nlm.nih.gov/sites/entrez?db=probe&cmd=search&term=%1||NCBI Probe database Public registry of nucleic acid reagents
dbSNP|http://www.ncbi.nlm.nih.gov/sites/entrez?db=snp&cmd=search&term=%1||Variation database maintained at the NCBI.
dbSTS|http://www.ncbi.nlm.nih.gov/sites/entrez?db=unists&cmd=search&term=%1||STS database maintained at the NCBI.
dictyBase|http://dictybase.org/db/cgi-bin/gene_page.pl?primary_id=%1||Dictyostelium genome database
EcoGene|http://ecogene.org/geneInfo.php?eg_id=%1||Database of Escherichia coli Sequence and Function
ENSEMBL|||Database of automatically annotated genomic data
ERIC|http://www.ericbrc.org/asap/feature_info.php?FeatureID=%1||Enteropathogen Resource Integration Center
ESTLIB|||EBI's EST library identifier
FANTOM_DB|||Database of Functional Annotation of Mouse
FLYBASE||| Database of Genetic and molecular data of Drosophila.
GABI|||Network of Different Plant Genomic Research Projects
GDB|||Human Genome Database accession numbers
GeneDB|http://www.genedb.org/genedb/Dispatcher?formType=navBar&organism=All%3A*&name=%1&desc=yes||Curated gene database for Schizosaccharomyces pombe, Leishmania major and Trypanosoma brucei
GeneID|http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=%1||Entrez Gene Database (replaces NCBI Locus Link)
GI|http://www.ncbi.nlm.nih.gov/sites/gquery?term=%1||GenInfo identifier, used as a unique sequence identifier for nucleotide and proteins
GO|||Gene Ontology Database identifier
GOA|||Gene Ontology Annotation Database Identifier
GRIN|||Germplasm Resources Information Network
HGNC|http://www.genenames.org/data/hgnc_data.php?hgnc_id=%1||Human Gene Nomenclature Database
H-InvDB|||H-Invitational Database
HSSP|||Database of homology-derived secondary structure of proteins
IMGT/GENE-DB|||Immunogenetics database, immunoglobulin and T-cell receptor genes
IMGT/LIGM|||Immunogenetics database, immunoglobulins and T-cell receptors
IMGT/HLA|||Immunogenetics database, human MHC
InterimID|||
Interpro|||InterPro protein sequence database
ISD|||Influenza Sequence Database
ISFinder|||Insertion sequence elements database
JCM||| Japan Collection of Microorganisms
LocusID||| NCBI LocusLink ID **Discontinued March 2005
MaizeGDB|||Maize Genome Database unique identifiers
MGI||| Mouse Genome Informatics
MIM|http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=%1|| Mendelian Inheritance in Man numbers
miRBase|http://microrna.sanger.ac.uk/cgi-bin/sequences/mirna_entry.pl?acc=%1||miRBase is the new home of microRNA data on the web, providing data previously accessible from the miRNA Registry.
NBRC|||NITE Biological Resource Center
NextDB|||Nematode Expression Pattern DataBase
niaEST|||NIA Mouse cDNA Project
NMPDR|||National Microbial Pathogen Data Resource
NRESTdb|||Natural Rubber EST database
Pathema|||Pathema Genome Resource
PDB|http://www.rcsb.org/pdb/download/downloadFile.do?fileFormat=pdb&compression=NO&structureId=%1|http://www.rcsb.org/pdb/files/%1.pdb|Biological macromolecule three dimensional structure database
PFAM|||Collection of protein families
PGN|||Plant Genome Network
PIR|||Protein Information Resource accession numbers
PSEUDO|||EMBL pseudo protein identifier
RATMAP|||Rat Genome Database
REBASE|http://rebase.neb.com/cgi-bin/reb_get.pl?enzname=%1||REBASE: The Restriction Enzyme Database
RFAM|http://rfam.sanger.ac.uk/family?entry=%1||RNA families database of alignments and CMs
RGD|||Rat Genome Database
RiceGenes|||Rice database accession numbers
RZPD|||Resource Centre Primary Database Clone Identifiers
SEED|||The SEED Database
SGD|||Saccharomyces Genome Database
SoyBase|||Glycine max Genome Database
SPTREMBL|http://www.ebi.ac.uk/uniprot/unisave/?query=%1&search=Go||SWISS-PROT protein sequence database
SubtiList|||Bacillus subtilis genome sequencing project
SWISS-PROT|http://www.uniprot.org/uniprot/%1|http://www.uniprot.org/uniprot/%1.txt|The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data.
taxon|||NCBI's taxonomic identifier
TIGRFAM|||TIGR protein families
UNILIB|||Unified Library Database, a library-level view of the EST and SAGE libraries present in dbEST, UniGene and SAGEmap
UniProtKB/Swiss-Prot|http://www.uniprot.org/uniprot/%1|http://www.uniprot.org/uniprot/%1.txt|section of the UniProt Knowledgebase, containing annotated records
UniProtKB/TrEMBL|http://www.uniprot.org/uniprot/%1|http://www.uniprot.org/uniprot/%1.txt|section of the UniProt Knowledgebase, containing computationally analysed records waiting for full manual annotation
UniSTS|http://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=%1||NCBI UniSTS is a comprehensive database of sequence tagged sites (STSs) derived from STS-based maps and other experiments.
VBASE2|||Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse
VectorBase|||Bioinformatics Resource Center for Invertebrate Vectors of Human Pathogens
WorfDB|||C. elegans ORFeome cloning project
WormBase|||Caenorhabditis elegans Genome Database
Xenbase|||Xenopus laevis and tropicalis biology and genomics resource
ZFIN|||Zebrafish Information Network
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