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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 | Name: seqan-seeds
Author: Birte Kehr <birte.kehr@fu-berlin.de>
Author: Manuel Holtgrewe <manuel.holtgrewe@fu-berlin.de>
Author: Rene Rahn <rene.rahn@fu-berlin.de>
Maintainer: Rene Rahn <rene.rahn@fu-berlin.de>
License: BSD 3-clause
Copyright: 2006-2013, FU Berlin
Status: mature
Description: Everything seeds: Local/global chaining, seed extension, ...
.
This module contains seed-related code. The seed set class allows the
efficient management of seeds and local chaining. Furthermore, the module
contains code for global, 2-dimensional chaining and gapped as well as ungapped
X-drop seed extension. Recently, a new banded chain alignment algorithm was
added to the module, such that a global alignment can be computed between large
genomic sequences given a monotonic non-decreasing chain of seeds.
.
This module will eventually be renamed to seeds and replace the old module.
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