sbmltoolbox 4.1.0-2 / usr / share / SBMLToolbox / Test / test-data / l2v3-all.xml

This file is indexed.

/usr/share/SBMLToolbox/Test/test-data/l2v3-all.xml is in sbmltoolbox 4.1.0-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below. 

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level2/version3" level="2" version="3">
  <model id="l2v3_all">
    <listOfFunctionDefinitions>
      <functionDefinition id="fd">
        <math xmlns="http://www.w3.org/1998/Math/MathML">
          <lambda>
            <bvar>
              <ci> x </ci>
            </bvar>
            <apply>
              <power/>
              <ci> x </ci>
              <cn type="integer"> 3 </cn>
            </apply>
          </lambda>
        </math>
      </functionDefinition>
    </listOfFunctionDefinitions>
    <listOfUnitDefinitions>
      <unitDefinition id="ud1">
        <listOfUnits>
          <unit kind="mole"/>
        </listOfUnits>
      </unitDefinition>
    </listOfUnitDefinitions>
    <listOfCompartmentTypes>
      <compartmentType id="hh"/>
    </listOfCompartmentTypes>
    <listOfSpeciesTypes>
      <speciesType id="gg"/>
    </listOfSpeciesTypes>
    <listOfCompartments>
      <compartment id="a" size="1" constant="false"/>
    </listOfCompartments>
    <listOfSpecies>
      <species id="s" compartment="a" initialAmount="0"/>
    </listOfSpecies>
    <listOfParameters>
      <parameter id="p" value="2" units="second" constant="false"/>
      <parameter id="p1" value="2" units="litre" constant="false"/>
      <parameter id="p2" value="2" units="litre" constant="false"/>
      <parameter id="p3" value="2" units="litre" constant="false"/>
      <parameter id="x" value="2" units="dimensionless" constant="false"/>
    </listOfParameters>
    <listOfInitialAssignments>
      <initialAssignment symbol="p1">
        <math xmlns="http://www.w3.org/1998/Math/MathML">
          <apply>
            <times/>
            <ci> x </ci>
            <ci> p3 </ci>
          </apply>
        </math>
      </initialAssignment>
    </listOfInitialAssignments>
    <listOfRules>
      <algebraicRule>
        <math xmlns="http://www.w3.org/1998/Math/MathML">
          <apply>
            <power/>
            <ci> x </ci>
            <cn type="integer"> 3 </cn>
          </apply>
        </math>
      </algebraicRule>
      <assignmentRule variable="p2">
        <math xmlns="http://www.w3.org/1998/Math/MathML">
          <apply>
            <times/>
            <ci> x </ci>
            <ci> p3 </ci>
          </apply>
        </math>
      </assignmentRule>
      <rateRule variable="p3">
        <math xmlns="http://www.w3.org/1998/Math/MathML">
          <apply>
            <divide/>
            <ci> p1 </ci>
            <ci> p </ci>
          </apply>
        </math>
      </rateRule>
    </listOfRules>
    <listOfConstraints>
      <constraint>
        <math xmlns="http://www.w3.org/1998/Math/MathML">
          <apply>
            <lt/>
            <ci> x </ci>
            <cn type="integer"> 3 </cn>
          </apply>
        </math>
      </constraint>
    </listOfConstraints>
    <listOfReactions>
      <reaction id="r">
        <listOfReactants>
          <speciesReference species="s">
            <stoichiometryMath>
              <math xmlns="http://www.w3.org/1998/Math/MathML">
                <apply>
                  <times/>
                  <ci> s </ci>
                  <ci> p </ci>
                </apply>
              </math>
            </stoichiometryMath>
          </speciesReference>
        </listOfReactants>
        <kineticLaw>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <divide/>
              <apply>
                <times/>
                <ci> s </ci>
                <ci> k </ci>
              </apply>
              <ci> p </ci>
            </apply>
          </math>
          <listOfParameters>
            <parameter id="k" value="9" units="litre"/>
          </listOfParameters>
        </kineticLaw>
      </reaction>
    </listOfReactions>
    <listOfEvents>
      <event id="w">
        <trigger>
          <math xmlns="http://www.w3.org/1998/Math/MathML">
            <apply>
              <lt/>
              <ci> x </ci>
              <cn type="integer"> 3 </cn>
            </apply>
          </math>
        </trigger>
        <listOfEventAssignments>
          <eventAssignment variable="a">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
              <apply>
                <times/>
                <ci> x </ci>
                <ci> p3 </ci>
              </apply>
            </math>
          </eventAssignment>
        </listOfEventAssignments>
      </event>
    </listOfEvents>
  </model>
</sbml>

APT Browse - Built by Thomas Orozco.