/usr/share/SBMLToolbox/Convenience/Contents.m is in sbmltoolbox 4.1.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 | % toolbox\Convenience
%
% The Convenience folder contains a number of convenience functions for
% checking information or manipulating math expressions.
%
%==============================
% y = CheckValidUnitKind(kind)
%==============================
% Takes
% 1. kind, a string representing a unit kind
% Returns
% 1. y =
% - 1 if the string represents a valid unit kind
% - 0 otherwise
%
%======================================
% newArray = LoseWhiteSpace(charArray)
%======================================
% Takes
% 1. charArray, an array of characters
% Returns
% 1. the array with any white space removed
%
%===================================
% pairs = PairBrackets(expression)
%===================================
% Takes
% 1. expression, a string representation of a math expression
% Returns
% 1. an array of the indices of each pair of brackets ordered from
% the opening bracket index
%
%======================================
% output = Rearrange(expression, name)
%======================================
% Takes
% 1. expression, a string representation of a math expression
% 2. name, a string representing the name of a variable
% Returns
% 1. the expression rearranged in terms of the variable
%
%=====================================
% newArray = RemoveDuplicates(array)
%=====================================
% Takes
% 1. array, any array
% Returns
% 1. the array with any duplicate entries removed
%
%============================================
% value = Substitute(expression, SBMLModel)
%============================================
% Takes
% 1. expression, a string representation of a math expression
% 2. SBMLModel, an SBML Model structure
% Returns
% 1. the value of the expression when all variables within the model have
% been substituted
%
%=============================================================
% newExpression = SubstituteConstants(expression, SBMLModel)
%=============================================================
% Takes
% 1. expression, a string representation of a math expression
% 2. SBMLModel, an SBML Model structure
% Returns
% 1. the string representation of the expression when all constants within the
% model have been substituted
%
%=========================================================================
% newExpression = SubstituteFunction(expression, SBMLFunctionDefinition)
%=========================================================================
% Takes
% 1. expression, a string representation of a math expression
% 2. SBMLFunctionDefinition, an SBML FunctionDefinition structure
% Returns
% 1. newExpression
% - the string representation of the expression when any instances of the
% functionDefinition have been substituted
% - an empty string if the functiondefinition is not in the original
% expression
%
%==============================
% y = isIntegralNumber(number)
%==============================
% Takes
% 1. number, any number
% Returns
% 1. y =
% - 1 if the number represents an integer
% - 0 otherwise
%
%===========================
% y = isValidUnitKind(kind)
%===========================
% Takes
% 1. kind, a string representing a unit kind
% returns
% 1. y =
% - 1 if the string represents a valid unit kind
% - 0 otherwise
%
%=============================================
% index = matchFunctionName(expression, name)
%=============================================
% Takes
% 1. expression, a string representation of a math expression
% 2. name, a string representing the name of a function
% Returns
% 1. the index of the starting point of 'name' in the 'expression'
%
%=====================================
% index = matchName(expression, name)
%=====================================
% Takes
% 1. expression, a string representation of a math expression
% 2. name, a string representing the name of a variable
% Returns
% 1. the index of the starting point of 'name' in the 'expression'
%
%=========================================
% value = piecewise(value1, test, value2)
%=========================================
% Takes
% 1. value1, the value to return if the test is true
% 2. test, a boolean test that will return true or false
% 3. value2, the value to return if the test is false
% Returns
% 1. value =
% - value1, if test returns true
% - value2, if test returns false
%
%
%==============================
% y = testmember(value, array)
%==============================
% Takes
% 1. value, any number/string
% 2. array, an array of objects
% Returns
% 1. y =
% - 1 if value is a member of the array
% - 0 otherwise
%
%<!---------------------------------------------------------------------------
% This file is part of SBMLToolbox. Please visit http://sbml.org for more
% information about SBML, and the latest version of SBMLToolbox.
%
% Copyright (C) 2009-2012 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
%
% Copyright (C) 2006-2008 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. University of Hertfordshire, Hatfield, UK
%
% Copyright (C) 2003-2005 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. Japan Science and Technology Agency, Japan
% 3. University of Hertfordshire, Hatfield, UK
%
% SBMLToolbox is free software; you can redistribute it and/or modify it
% under the terms of the GNU Lesser General Public License as published by
% the Free Software Foundation. A copy of the license agreement is provided
% in the file named "LICENSE.txt" included with this software distribution.
%----------------------------------------------------------------------- -->
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