/usr/share/SBMLToolbox/AccessModel/Test/TestGetStoichiometrySparse.m is in sbmltoolbox 4.1.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 | function fail = TestGetStoichiometrySparse
%<!---------------------------------------------------------------------------
% This file is part of SBMLToolbox. Please visit http://sbml.org for more
% information about SBML, and the latest version of SBMLToolbox.
%
% Copyright (C) 2009-2012 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
%
% Copyright (C) 2006-2008 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. University of Hertfordshire, Hatfield, UK
%
% Copyright (C) 2003-2005 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. Japan Science and Technology Agency, Japan
% 3. University of Hertfordshire, Hatfield, UK
%
% SBMLToolbox is free software; you can redistribute it and/or modify it
% under the terms of the GNU Lesser General Public License as published by
% the Free Software Foundation. A copy of the license agreement is provided
% in the file named "LICENSE.txt" included with this software distribution.
%----------------------------------------------------------------------- -->
m = TranslateSBML('../../Test/test-data/algebraicRules.xml');
matrix = sparse(zeros(5,2));
matrix(1,1) = -1;
matrix(2,1) = 1;
matrix(2,2) = -1;
matrix(5,2) = 1;
fail = TestFunction('GetStoichiometrySparse', 1, 1, m, matrix);
m = TranslateSBML('../../Test/test-data/initialAssignments.xml');
matrix1 = sparse(zeros(5,2));
matrix1(1,1) = -1;
matrix1(2,1) = 1;
matrix1(2,2) = -1;
matrix1(5,2) = 1;
fail = fail + TestFunction('GetStoichiometrySparse', 1, 1, m, matrix1);
m = TranslateSBML('../../Test/test-data/sparseStoichiometry.xml');
matrix2 = sparse(zeros(12,4));
matrix2(1,1) = -1;
matrix2(2,2) = -1;
matrix2(11,3) = -1;
matrix2(5,4) = -1;
matrix2(2,1) = 1;
matrix2(3,2) = 1;
matrix2(12,3) = 1;
matrix2(6,4) = 1;
fail = fail + TestFunction('GetStoichiometrySparse', 1, 1, m, matrix2);
m = TranslateSBML('../../Test/test-data/l3v1core.xml');
matrix3 = [NaN; 0; 1];
fail = fail + TestFunction('GetStoichiometrySparse', 1, 1, m, matrix3);
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