/usr/share/SBMLToolbox/AccessModel/Test/TestGetSpecies.m is in sbmltoolbox 4.1.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 | function fail = TestGetSpecies
%<!---------------------------------------------------------------------------
% This file is part of SBMLToolbox. Please visit http://sbml.org for more
% information about SBML, and the latest version of SBMLToolbox.
%
% Copyright (C) 2009-2012 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
%
% Copyright (C) 2006-2008 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. University of Hertfordshire, Hatfield, UK
%
% Copyright (C) 2003-2005 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. Japan Science and Technology Agency, Japan
% 3. University of Hertfordshire, Hatfield, UK
%
% SBMLToolbox is free software; you can redistribute it and/or modify it
% under the terms of the GNU Lesser General Public License as published by
% the Free Software Foundation. A copy of the license agreement is provided
% in the file named "LICENSE.txt" included with this software distribution.
%----------------------------------------------------------------------- -->
m = TranslateSBML('../../Test/test-data/l1v1.xml');
names = {'S1', 'S2', 'x0'};
values = [1.5, 1.45, 1];
fail = TestFunction('GetSpecies', 1, 2, m, names, values);
m = TranslateSBML('../../Test/test-data/initialAssignments.xml');
names = {'S1', 'S2', 'S3', 'X', 'S4'};
values = [3, 6, 7, 9, 0];
fail = fail + TestFunction('GetSpecies', 1, 2, m, names, values);
m = TranslateSBML('../../Test/test-data/funcDefsWithInitialAssignments.xml');
names = {'S1', 'S2', 'S3', 'X', 'S4'};
values = [3, 6, 0, 9, 0];
fail = fail + TestFunction('GetSpecies', 1, 2, m, names, values);
% m = TranslateSBML('../../Test/test-data/l3v1core.xml');
%
% names = {'s', 's1', 's2'};
% values = [0, 2.2, NaN];
%
% fail = fail + TestFunction('GetSpecies', 1, 2, m, names, values);
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