/usr/share/SBMLToolbox/AccessModel/Test/TestGetRateLawsFromReactions.m is in sbmltoolbox 4.1.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 | function fail = TestGetRateLawsFromReactions
%<!---------------------------------------------------------------------------
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% information about SBML, and the latest version of SBMLToolbox.
%
% Copyright (C) 2009-2012 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
%
% Copyright (C) 2006-2008 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. University of Hertfordshire, Hatfield, UK
%
% Copyright (C) 2003-2005 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. Japan Science and Technology Agency, Japan
% 3. University of Hertfordshire, Hatfield, UK
%
% SBMLToolbox is free software; you can redistribute it and/or modify it
% under the terms of the GNU Lesser General Public License as published by
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fail = 0;
m = TranslateSBML('../../Test/test-data/algebraicRules.xml');
species = {'S1', 'S2', 'S3', 'X', 'S4'};
rateLaws = {' - (k*S1)', ' + (k*S1) - (k_R2*S2)', '0', '0', ' + (k_R2*S2)'};
fail = fail + TestFunction('GetRateLawsFromReactions', 1, 2, m, species, rateLaws);
m = TranslateSBML('../../Test/test-data/l2v2-newComponents.xml');
species = {'X0', 'X1'};
rateLaws = {' - (v_in*X0/t_in)', '0'};
fail = fail + TestFunction('GetRateLawsFromReactions', 1, 2, m, species, rateLaws);
m = TranslateSBML('../../Test/test-data/l3v1core.xml');
species = {'s', 's1', 's2'};
rateLaws = {' - (s*p) * (s*k_r/p)', '0', ' + (s*k_r/p)'};
fail = fail + TestFunction('GetRateLawsFromReactions', 1, 2, m, species, rateLaws);
m = TranslateSBML('../../Test/test-data/testNegativeLocalParameter.xml');
species = {'E', 'ES', 'S', 'P'};
rateLaws = {' - (cell*(k1_R1*E*S-k2_R1*ES)) + (cell*k3_R2*ES)', ...
' + (cell*(k1_R1*E*S-k2_R1*ES)) - (cell*k3_R2*ES)', ...
' - (cell*(k1_R1*E*S-k2_R1*ES))', ' + (cell*k3_R2*ES)'};
fail = fail + TestFunction('GetRateLawsFromReactions', 1, 2, m, species, rateLaws);
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