/usr/share/SBMLToolbox/AccessModel/Test/TestDetermineSpeciesRoleInReaction.m is in sbmltoolbox 4.1.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 | function fail = TestDetermineSpeciesRoleInReaction
%<!---------------------------------------------------------------------------
% This file is part of SBMLToolbox. Please visit http://sbml.org for more
% information about SBML, and the latest version of SBMLToolbox.
%
% Copyright (C) 2009-2012 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
%
% Copyright (C) 2006-2008 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. University of Hertfordshire, Hatfield, UK
%
% Copyright (C) 2003-2005 jointly by the following organizations:
% 1. California Institute of Technology, Pasadena, CA, USA
% 2. Japan Science and Technology Agency, Japan
% 3. University of Hertfordshire, Hatfield, UK
%
% SBMLToolbox is free software; you can redistribute it and/or modify it
% under the terms of the GNU Lesser General Public License as published by
% the Free Software Foundation. A copy of the license agreement is provided
% in the file named "LICENSE.txt" included with this software distribution.
%----------------------------------------------------------------------- -->
m = TranslateSBML('../../Test/test-data/species.xml');
s1 = m.species(1);
s2 = m.species(2);
s4 = m.species(4);
r1 = m.reaction(1);
r2 = m.reaction(2);
r3 = m.reaction(3);
fail = TestFunction('DetermineSpeciesRoleInReaction', 2, 1, s4, r1, 0);
fail = fail + TestFunction('DetermineSpeciesRoleInReaction', 2, 1, s2, r2, [1,0,0,2,0]);
fail = fail + TestFunction('DetermineSpeciesRoleInReaction', 2, 1, s1, r1, [0,1,0,0,1]);
fail = fail + TestFunction('DetermineSpeciesRoleInReaction', 2, 1, s4, r3, [0,0,1,0,0]);
fail = fail + TestFunction('DetermineSpeciesRoleInReaction', 2, 1, s2, r3, [1,1,0,1,2]);
m = TranslateSBML('../../Test/test-data/l1v2-all.xml');
s1 = m.species(1);
s4 = m.species(4);
r1 = m.reaction(1);
fail = fail + TestFunction('DetermineSpeciesRoleInReaction', 2, 1, s4, r1, 0);
fail = fail + TestFunction('DetermineSpeciesRoleInReaction', 2, 1, s1, r1, [0,1,0,0,1]);
m = TranslateSBML('../../Test/test-data/initialAssignments.xml');
s1 = m.species(1);
s2 = m.species(3);
r1 = m.reaction(1);
fail = fail + TestFunction('DetermineSpeciesRoleInReaction', 2, 1, s2, r1, 0);
fail = fail + TestFunction('DetermineSpeciesRoleInReaction', 2, 1, s1, r1, [0,1,0,0, 1]);
m = TranslateSBML('../../Test/test-data/l2v2-newComponents.xml');
s1 = m.species(1);
r1 = m.reaction(1);
fail = fail + TestFunction('DetermineSpeciesRoleInReaction', 2, 1, s1, r1, [0,1,0,0, 1]);
m = TranslateSBML('../../Test/test-data/l3v1core.xml');
s1 = m.species(1);
r1 = m.reaction(1);
fail = fail + TestFunction('DetermineSpeciesRoleInReaction', 2, 1, s1, r1, [0,1,0,0, 1]);
|