This file is indexed.

/usr/lib/R/site-library/hypergraph/INDEX is in r-bioc-hypergraph 1.42.0-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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DirectedHyperedge       Constructor for DirectedHyperedge objects
DirectedHyperedge-class
                        Class DirectedHyperedge
Hyperedge               Constructor for Hyeredge objects
Hyperedge-class         Class Hyperedge
Hypergraph              Constructor for Hypergraph objects
Hypergraph-class        Class Hypergraph
kCoresHypergraph        Find all the k-cores in a hypergraph
l2hel                   Create lists of Hyperedge objects
vCoverHypergraph        Approximate minimum weight vertex cover in a
                        hypergraph