r-bioc-cummerbund 2.12.0-1 in ubuntu - xenial / universe

About

This package is 2.0 MB. It is available at http://archive.ubuntu.com/ubuntu/pool/universe/r/r-bioc-cummerbund/r-bioc-cummerbund_2.12.0-1_all.deb .

View its full control file here: debian/control.

Description

tool for analysis of Cufflinks RNA-Seq output

Relations

This package depends on: r-base-core (>= 3.2.3-1), r-api-3, r-cran-rsqlite, r-cran-reshape2, r-cran-ggplot2, r-cran-fastcluster, r-bioc-gviz (>= 1.14.0).

This package does not recommend any other package.

This package does not suggest any other package.

This package does not conflict with any other package.

Package Contents

This package is indexed.

r-bioc-cummerbund 2.12.0-1 is in ubuntu - xenial / universe. This package's architecture is: architectureless.

File Mime Type Owner Mode Size
/usr/ root:root 0o755
/usr/lib/ root:root 0o755
/usr/lib/R/ root:root 0o755
/usr/lib/R/site-library/ root:root 0o755
/usr/lib/R/site-library/cummeRbund/ root:root 0o755
/usr/lib/R/site-library/cummeRbund/data/ root:root 0o755
/usr/lib/R/site-library/cummeRbund/data/sampleData.rda application/gzip root:root 0o644 158 bytes
/usr/lib/R/site-library/cummeRbund/data/sampleData.RData application/gzip root:root 0o644 44.5 KB
/usr/lib/R/site-library/cummeRbund/DESCRIPTION text/plain root:root 0o644 1.4 KB
/usr/lib/R/site-library/cummeRbund/doc/ root:root 0o755
/usr/lib/R/site-library/cummeRbund/doc/cummeRbund-example-workflow.pdf application/pdf root:root 0o644 165.4 KB
/usr/lib/R/site-library/cummeRbund/doc/cummeRbund-example-workflow.R text/plain root:root 0o644 3.2 KB
/usr/lib/R/site-library/cummeRbund/doc/cummeRbund-example-workflow.Rnw text/x-tex root:root 0o644 4.9 KB
/usr/lib/R/site-library/cummeRbund/doc/cummeRbund-manual.pdf application/pdf root:root 0o644 1.3 MB
/usr/lib/R/site-library/cummeRbund/doc/cummeRbund-manual.R text/plain root:root 0o644 20.9 KB
/usr/lib/R/site-library/cummeRbund/doc/cummeRbund-manual.Rnw text/x-tex root:root 0o644 55.8 KB
/usr/lib/R/site-library/cummeRbund/doc/index.html text/html root:root 0o644 1.9 KB
/usr/lib/R/site-library/cummeRbund/extdata/ root:root 0o755
/usr/lib/R/site-library/cummeRbund/extdata/cds.count_tracking text/plain root:root 0o644 77.7 KB
/usr/lib/R/site-library/cummeRbund/extdata/cds.diff text/plain root:root 0o644 92.0 KB
/usr/lib/R/site-library/cummeRbund/extdata/cds_exp.diff text/plain root:root 0o644 302.4 KB
/usr/lib/R/site-library/cummeRbund/extdata/cds.fpkm_tracking text/plain root:root 0o644 108.0 KB
/usr/lib/R/site-library/cummeRbund/extdata/cds.read_group_tracking text/plain root:root 0o644 235.3 KB
/usr/lib/R/site-library/cummeRbund/extdata/chr1_snippet.gtf text/plain root:root 0o644 2.5 MB
/usr/lib/R/site-library/cummeRbund/extdata/cuffData_schema.sql text/plain root:root 0o644 21.3 KB
/usr/lib/R/site-library/cummeRbund/extdata/gene_exp.diff text/plain root:root 0o644 141.6 KB
/usr/lib/R/site-library/cummeRbund/extdata/genes.count_tracking text/plain root:root 0o644 40.4 KB
/usr/lib/R/site-library/cummeRbund/extdata/genes.fpkm_tracking text/plain root:root 0o644 54.7 KB
/usr/lib/R/site-library/cummeRbund/extdata/genes.read_group_tracking text/plain root:root 0o644 118.1 KB
/usr/lib/R/site-library/cummeRbund/extdata/isoform_exp.diff text/plain root:root 0o644 429.1 KB
/usr/lib/R/site-library/cummeRbund/extdata/isoforms.count_tracking text/plain root:root 0o644 111.3 KB
/usr/lib/R/site-library/cummeRbund/extdata/isoforms.fpkm_tracking text/plain root:root 0o644 165.3 KB
/usr/lib/R/site-library/cummeRbund/extdata/isoforms.read_group_tracking text/plain root:root 0o644 374.9 KB
/usr/lib/R/site-library/cummeRbund/extdata/promoters.diff text/plain root:root 0o644 96.5 KB
/usr/lib/R/site-library/cummeRbund/extdata/read_groups.info text/plain root:root 0o644 402 bytes
/usr/lib/R/site-library/cummeRbund/extdata/run.info text/plain root:root 0o644 226 bytes
/usr/lib/R/site-library/cummeRbund/extdata/splicing.diff text/plain root:root 0o644 168.4 KB
/usr/lib/R/site-library/cummeRbund/extdata/tss_group_exp.diff text/plain root:root 0o644 225.4 KB
/usr/lib/R/site-library/cummeRbund/extdata/tss_groups.count_tracking text/plain root:root 0o644 60.6 KB
/usr/lib/R/site-library/cummeRbund/extdata/tss_groups.fpkm_tracking text/plain root:root 0o644 81.8 KB
/usr/lib/R/site-library/cummeRbund/extdata/tss_groups.read_group_tracking text/plain root:root 0o644 182.0 KB
/usr/lib/R/site-library/cummeRbund/help/ root:root 0o755
/usr/lib/R/site-library/cummeRbund/help/aliases.rds application/gzip root:root 0o644 1.5 KB
/usr/lib/R/site-library/cummeRbund/help/AnIndex text/plain root:root 0o644 6.8 KB
/usr/lib/R/site-library/cummeRbund/help/cummeRbund.rdb application/octet-stream root:root 0o644 122.6 KB
/usr/lib/R/site-library/cummeRbund/help/cummeRbund.rdx application/gzip root:root 0o644 1.4 KB
/usr/lib/R/site-library/cummeRbund/help/paths.rds application/gzip root:root 0o644 601 bytes
/usr/lib/R/site-library/cummeRbund/html/ root:root 0o755
/usr/lib/R/site-library/cummeRbund/html/00Index.html text/html root:root 0o644 22.2 KB
/usr/lib/R/site-library/cummeRbund/html/R.css text/plain root:root 0o644 1.3 KB
/usr/lib/R/site-library/cummeRbund/INDEX text/plain root:root 0o644 2.8 KB
/usr/lib/R/site-library/cummeRbund/Meta/ root:root 0o755
/usr/lib/R/site-library/cummeRbund/Meta/data.rds application/gzip root:root 0o644 119 bytes
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/usr/lib/R/site-library/cummeRbund/Meta/links.rds application/gzip root:root 0o644 1.7 KB
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/usr/lib/R/site-library/cummeRbund/Meta/package.rds application/gzip root:root 0o644 1.2 KB
/usr/lib/R/site-library/cummeRbund/Meta/Rd.rds application/gzip root:root 0o644 2.5 KB
/usr/lib/R/site-library/cummeRbund/Meta/vignette.rds application/gzip root:root 0o644 303 bytes
/usr/lib/R/site-library/cummeRbund/NAMESPACE text/x-objective-c root:root 0o644 1.4 KB
/usr/lib/R/site-library/cummeRbund/NEWS text/plain root:root 0o644 15.7 KB
/usr/lib/R/site-library/cummeRbund/R/ root:root 0o755
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/usr/lib/R/site-library/cummeRbund/R/cummeRbund.rdb application/octet-stream root:root 0o644 501.5 KB
/usr/lib/R/site-library/cummeRbund/R/cummeRbund.rdx application/gzip root:root 0o644 6.0 KB
/usr/lib/R/site-library/cummeRbund/reports/ root:root 0o755
/usr/lib/R/site-library/cummeRbund/reports/runReport.Rmd text/plain root:root 0o644 972 bytes
/usr/lib/R/site-library/cummeRbund/reports/styles/ root:root 0o755
/usr/lib/R/site-library/cummeRbund/reports/styles/report_style.css text/plain root:root 0o644 1.7 KB
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/r-bioc-cummerbund/ root:root 0o755
/usr/share/doc/r-bioc-cummerbund/changelog.Debian.gz application/gzip root:root 0o644 931 bytes
/usr/share/doc/r-bioc-cummerbund/copyright text/plain root:root 0o644 834 bytes
/usr/share/doc/r-bioc-cummerbund/examples/ root:root 0o755
/usr/share/doc/r-bioc-cummerbund/examples/vignettes/ root:root 0o755
/usr/share/doc/r-bioc-cummerbund/examples/vignettes/cuffData_schema.pdf.gz application/gzip root:root 0o644 125.1 KB
/usr/share/doc/r-bioc-cummerbund/examples/vignettes/cummeRbund-example-workflow.Rnw.gz application/gzip root:root 0o644 1.6 KB
/usr/share/doc/r-bioc-cummerbund/examples/vignettes/cummeRbund-manual.Rnw.gz application/gzip root:root 0o644 15.4 KB
/usr/share/doc/r-bioc-cummerbund/examples/vignettes/ENCODE_SCV.pdf.gz application/gzip root:root 0o644 27.1 KB
/usr/share/doc/r-bioc-cummerbund/README text/plain root:root 0o644 1007 bytes
/usr/share/doc/r-bioc-cummerbund/README.test text/plain root:root 0o644 262 bytes
/usr/share/doc/r-bioc-cummerbund/run-unit-test text/x-shellscript root:root 0o644 422 bytes

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