/usr/lib/R/site-library/biomaRt/INDEX is in r-bioc-biomart 2.26.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 | Mart-class Class Mart
NP2009code Display the analysis code from the 2009 Nature
protocols paper
attributePages Gives a summary of the attribute pages
exportFASTA Exports getSequence results to FASTA format
filterOptions Displays the filter options
filterType Displays the filter type
getBM Retrieves information from the BioMart database
getBMlist Retrieves information from the BioMart database
getGene Retrieves gene annotation information given a
vector of identifiers
getLDS Retrieves information from two linked datasets
getSequence Retrieves sequences
getXML Retrieves information from the BioMart database
using an XML query
listAttributes lists the attributes available in the selected
dataset
listDatasets lists the datasets available in the selected
BioMart database
listEnsembl lists the available BioMart databases hosted by
Ensembl
listFilters lists the filters available in the selected
dataset
listMarts lists the avilable BioMart databases
select-methods Retrieve information from the BioMart databases
useDataset Select a dataset to use and updates Mart object
useEnsembl Connects to the selected BioMart database and
dataset hosted by Ensembl
useMart Connects to the selected BioMart database and
dataset
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