This file is indexed.

/usr/share/doc/python-pysam/tests/ex4.sam is in python-pysam-tests 0.7.7-1ubuntu1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

1
2
3
4
5
6
7
8
9
@HD	VN:1.0
@SQ	SN:chr1	LN:100
@SQ	SN:chr2	LN:100
@RG	ID:L1	PU:SC_1_10	LB:SC_1	SM:NA12891
@RG	ID:L2	PU:SC_2_12	LB:SC_2	SM:NA12891
@CO	this is a comment
@CO	this is another comment
read_28833_29006_6945	99	chr1	21	20	10M1D25M	=	200	167	AGCTTAGCTAGCTACCTATATCTTGGTCTTGGCCG	<<<<<<<<<<<<<<<<<<<<<:<9/,&,22;;<<<	NM:i:1	RG:Z:L1
read_28701_28881_323b	147	chr2	21	30	35M	=	500	412	ACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCA	<<<<<;<<<<7;:<<<6;<<<<<<<<<<<<7<<<<	MF:i:18	RG:Z:L2