/usr/share/perl5/GO/Handlers/tbl.pm is in libgo-perl 0.15-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 | # $Id: tbl.pm,v 1.3 2004/11/24 02:28:00 cmungall Exp $
#
# This GO module is maintained by Chris Mungall <cjm@fruitfly.org>
#
# see also - http://www.geneontology.org
# - http://www.godatabase.org/dev
#
# You may distribute this module under the same terms as perl itself
=head1 NAME
GO::Handlers::tbl - TBL handler
=head1 SYNOPSIS
use GO::Handlers::tbl
=cut
=head1 DESCRIPTION
=head1 PUBLIC METHODS -
=cut
# makes objects from parser events
package GO::Handlers::tbl;
use base qw(GO::Handlers::base);
use strict;
sub e_term {
my $self = shift;
my $t = shift;
my $def = $t->get_def;
my $defstr = '';
if ($def) {
$defstr = $def->get_defstr;
}
my @syns = $t->get_synonym;
my @synstrs = map {$_->get_synonym_text} @syns;
my @cols =
($t->get_id,
$t->get_name,
$defstr,
join('; ', @synstrs));
$self->print(join("\t", @cols));
$self->print("\n");
return;
}
sub e_prod {
my $self = shift;
my $p = shift;
my $proddb = $self->up(1)->sget_proddb;
my @cols =
($proddb,
$p->get_prodacc,
$p->get_prodsymbol,
$p->get_prodtype,
$p->get_prodtaxa,
join('; ', map { ($_->get_is_not ? "NOT:" : "").$_->get_termacc } $p->get_assoc),
);
$self->print(join("\t", @cols));
$self->print("\n");
return;
}
1;
|