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<div id="projectname">libfreecontact
 <span id="projectnumber">1.0.21</span>
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<div class="textblock">Here are the classes, structs, unions and interfaces with brief descriptions:</div><div class="directory">
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<tr id="row_0_" class="even"><td class="entry"><span style="width:0px;display:inline-block;"> </span><span id="arr_0_" class="arrow" onclick="toggleFolder('0_')">▼</span><span class="icona"><span class="icon">N</span></span><a class="el" href="namespacefreecontact.html" target="_self">freecontact</a></td><td class="desc"></td></tr>
<tr id="row_0_0_"><td class="entry"><span style="width:32px;display:inline-block;"> </span><span class="icona"><span class="icon">C</span></span><a class="el" href="classfreecontact_1_1__glasso__timer.html" target="_self">_glasso_timer</a></td><td class="desc"></td></tr>
<tr id="row_0_1_" class="even"><td class="entry"><span style="width:32px;display:inline-block;"> </span><span class="icona"><span class="icon">C</span></span><a class="el" href="classfreecontact_1_1__rawscore__calc__t.html" target="_self">_rawscore_calc_t</a></td><td class="desc">Calculates raw score for an i,j contact </td></tr>
<tr id="row_0_2_"><td class="entry"><span style="width:32px;display:inline-block;"> </span><span class="icona"><span class="icon">C</span></span><a class="el" href="classfreecontact_1_1af__vector.html" target="_self">af_vector</a></td><td class="desc"></td></tr>
<tr id="row_0_3_" class="even"><td class="entry"><span style="width:32px;display:inline-block;"> </span><span class="icona"><span class="icon">C</span></span><a class="el" href="classfreecontact_1_1ali__t.html" target="_self">ali_t</a></td><td class="desc">Protein sequence alignment </td></tr>
<tr id="row_0_4_"><td class="entry"><span style="width:32px;display:inline-block;"> </span><span class="icona"><span class="icon">C</span></span><a class="el" href="classfreecontact_1_1alilen__error.html" target="_self">alilen_error</a></td><td class="desc">Alignment length exception </td></tr>
<tr id="row_0_5_" class="even"><td class="entry"><span style="width:32px;display:inline-block;"> </span><span class="icona"><span class="icon">C</span></span><a class="el" href="structfreecontact_1_1contact__t.html" target="_self">contact_t</a></td><td class="desc">Contact prediction </td></tr>
<tr id="row_0_6_"><td class="entry"><span style="width:32px;display:inline-block;"> </span><span class="icona"><span class="icon">C</span></span><a class="el" href="classfreecontact_1_1cov__vector.html" target="_self">cov_vector</a></td><td class="desc"></td></tr>
<tr id="row_0_7_" class="even"><td class="entry"><span style="width:32px;display:inline-block;"> </span><span class="icona"><span class="icon">C</span></span><a class="el" href="classfreecontact_1_1ct__vector.html" target="_self">ct_vector</a></td><td class="desc"></td></tr>
<tr id="row_0_8_"><td class="entry"><span style="width:32px;display:inline-block;"> </span><span class="icona"><span class="icon">C</span></span><a class="el" href="classfreecontact_1_1d2matrix.html" target="_self">d2matrix</a></td><td class="desc">2-dimensional matrix </td></tr>
<tr id="row_0_9_" class="even"><td class="entry"><span style="width:32px;display:inline-block;"> </span><span class="icona"><span class="icon">C</span></span><a class="el" href="classfreecontact_1_1icme__timeout__error.html" target="_self">icme_timeout_error</a></td><td class="desc">Inverse covariance matrix estimation timeout exception </td></tr>
<tr id="row_0_10_"><td class="entry"><span style="width:32px;display:inline-block;"> </span><span class="icona"><span class="icon">C</span></span><a class="el" href="structfreecontact_1_1parset__t.html" target="_self">parset_t</a></td><td class="desc">Parameter set structure for <a class="el" href="classfreecontact_1_1predictor.html#af15b96aaec6461bfc3e1bdcc9e917a4c" title="Predict residue contacts. ">predictor::run()</a> </td></tr>
<tr id="row_0_11_" class="even"><td class="entry"><span style="width:32px;display:inline-block;"> </span><span class="icona"><span class="icon">C</span></span><a class="el" href="classfreecontact_1_1pf__vector.html" target="_self">pf_vector</a></td><td class="desc"></td></tr>
<tr id="row_0_12_"><td class="entry"><span style="width:32px;display:inline-block;"> </span><span class="icona"><span class="icon">C</span></span><a class="el" href="classfreecontact_1_1predictor.html" target="_self">predictor</a></td><td class="desc">Protein residue contact predictor </td></tr>
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