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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (version 1.7.0_55) on Tue May 20 23:10:35 UTC 2014 -->
<title>Overview List (BioJava-1.7.1 API)</title>
<meta name="date" content="2014-05-20">
<link rel="stylesheet" type="text/css" href="stylesheet.css" title="Style">
</head>
<body>
<div class="indexHeader"><a href="allclasses-frame.html" target="packageFrame">All Classes</a></div>
<div class="indexContainer">
<h2 title="Packages">Packages</h2>
<ul title="Packages">
<li><a href="org/biojava/bibliography/package-frame.html" target="packageFrame">org.biojava.bibliography</a></li>
<li><a href="org/biojava/bio/package-frame.html" target="packageFrame">org.biojava.bio</a></li>
<li><a href="org/biojava/bio/alignment/package-frame.html" target="packageFrame">org.biojava.bio.alignment</a></li>
<li><a href="org/biojava/bio/annodb/package-frame.html" target="packageFrame">org.biojava.bio.annodb</a></li>
<li><a href="org/biojava/bio/chromatogram/package-frame.html" target="packageFrame">org.biojava.bio.chromatogram</a></li>
<li><a href="org/biojava/bio/chromatogram/graphic/package-frame.html" target="packageFrame">org.biojava.bio.chromatogram.graphic</a></li>
<li><a href="org/biojava/bio/dist/package-frame.html" target="packageFrame">org.biojava.bio.dist</a></li>
<li><a href="org/biojava/bio/dp/package-frame.html" target="packageFrame">org.biojava.bio.dp</a></li>
<li><a href="org/biojava/bio/dp/onehead/package-frame.html" target="packageFrame">org.biojava.bio.dp.onehead</a></li>
<li><a href="org/biojava/bio/dp/twohead/package-frame.html" target="packageFrame">org.biojava.bio.dp.twohead</a></li>
<li><a href="org/biojava/bio/gui/package-frame.html" target="packageFrame">org.biojava.bio.gui</a></li>
<li><a href="org/biojava/bio/gui/glyph/package-frame.html" target="packageFrame">org.biojava.bio.gui.glyph</a></li>
<li><a href="org/biojava/bio/gui/sequence/package-frame.html" target="packageFrame">org.biojava.bio.gui.sequence</a></li>
<li><a href="org/biojava/bio/gui/sequence/tracklayout/package-frame.html" target="packageFrame">org.biojava.bio.gui.sequence.tracklayout</a></li>
<li><a href="org/biojava/bio/molbio/package-frame.html" target="packageFrame">org.biojava.bio.molbio</a></li>
<li><a href="org/biojava/bio/program/package-frame.html" target="packageFrame">org.biojava.bio.program</a></li>
<li><a href="org/biojava/bio/program/abi/package-frame.html" target="packageFrame">org.biojava.bio.program.abi</a></li>
<li><a href="org/biojava/bio/program/blast2html/package-frame.html" target="packageFrame">org.biojava.bio.program.blast2html</a></li>
<li><a href="org/biojava/bio/program/das/package-frame.html" target="packageFrame">org.biojava.bio.program.das</a></li>
<li><a href="org/biojava/bio/program/das/dasalignment/package-frame.html" target="packageFrame">org.biojava.bio.program.das.dasalignment</a></li>
<li><a href="org/biojava/bio/program/das/dasstructure/package-frame.html" target="packageFrame">org.biojava.bio.program.das.dasstructure</a></li>
<li><a href="org/biojava/bio/program/fastq/package-frame.html" target="packageFrame">org.biojava.bio.program.fastq</a></li>
<li><a href="org/biojava/bio/program/formats/package-frame.html" target="packageFrame">org.biojava.bio.program.formats</a></li>
<li><a href="org/biojava/bio/program/gff/package-frame.html" target="packageFrame">org.biojava.bio.program.gff</a></li>
<li><a href="org/biojava/bio/program/gff3/package-frame.html" target="packageFrame">org.biojava.bio.program.gff3</a></li>
<li><a href="org/biojava/bio/program/hmmer/package-frame.html" target="packageFrame">org.biojava.bio.program.hmmer</a></li>
<li><a href="org/biojava/bio/program/homologene/package-frame.html" target="packageFrame">org.biojava.bio.program.homologene</a></li>
<li><a href="org/biojava/bio/program/indexdb/package-frame.html" target="packageFrame">org.biojava.bio.program.indexdb</a></li>
<li><a href="org/biojava/bio/program/phred/package-frame.html" target="packageFrame">org.biojava.bio.program.phred</a></li>
<li><a href="org/biojava/bio/program/sax/package-frame.html" target="packageFrame">org.biojava.bio.program.sax</a></li>
<li><a href="org/biojava/bio/program/sax/blastxml/package-frame.html" target="packageFrame">org.biojava.bio.program.sax.blastxml</a></li>
<li><a href="org/biojava/bio/program/scf/package-frame.html" target="packageFrame">org.biojava.bio.program.scf</a></li>
<li><a href="org/biojava/bio/program/ssaha/package-frame.html" target="packageFrame">org.biojava.bio.program.ssaha</a></li>
<li><a href="org/biojava/bio/program/ssbind/package-frame.html" target="packageFrame">org.biojava.bio.program.ssbind</a></li>
<li><a href="org/biojava/bio/program/tagvalue/package-frame.html" target="packageFrame">org.biojava.bio.program.tagvalue</a></li>
<li><a href="org/biojava/bio/program/unigene/package-frame.html" target="packageFrame">org.biojava.bio.program.unigene</a></li>
<li><a href="org/biojava/bio/program/xff/package-frame.html" target="packageFrame">org.biojava.bio.program.xff</a></li>
<li><a href="org/biojava/bio/program/xml/package-frame.html" target="packageFrame">org.biojava.bio.program.xml</a></li>
<li><a href="org/biojava/bio/proteomics/package-frame.html" target="packageFrame">org.biojava.bio.proteomics</a></li>
<li><a href="org/biojava/bio/proteomics/aaindex/package-frame.html" target="packageFrame">org.biojava.bio.proteomics.aaindex</a></li>
<li><a href="org/biojava/bio/search/package-frame.html" target="packageFrame">org.biojava.bio.search</a></li>
<li><a href="org/biojava/bio/seq/package-frame.html" target="packageFrame">org.biojava.bio.seq</a></li>
<li><a href="org/biojava/bio/seq/db/package-frame.html" target="packageFrame">org.biojava.bio.seq.db</a></li>
<li><a href="org/biojava/bio/seq/db/biofetch/package-frame.html" target="packageFrame">org.biojava.bio.seq.db.biofetch</a></li>
<li><a href="org/biojava/bio/seq/db/biosql/package-frame.html" target="packageFrame">org.biojava.bio.seq.db.biosql</a></li>
<li><a href="org/biojava/bio/seq/db/emblcd/package-frame.html" target="packageFrame">org.biojava.bio.seq.db.emblcd</a></li>
<li><a href="org/biojava/bio/seq/db/flat/package-frame.html" target="packageFrame">org.biojava.bio.seq.db.flat</a></li>
<li><a href="org/biojava/bio/seq/distributed/package-frame.html" target="packageFrame">org.biojava.bio.seq.distributed</a></li>
<li><a href="org/biojava/bio/seq/filter/package-frame.html" target="packageFrame">org.biojava.bio.seq.filter</a></li>
<li><a href="org/biojava/bio/seq/homol/package-frame.html" target="packageFrame">org.biojava.bio.seq.homol</a></li>
<li><a href="org/biojava/bio/seq/impl/package-frame.html" target="packageFrame">org.biojava.bio.seq.impl</a></li>
<li><a href="org/biojava/bio/seq/io/package-frame.html" target="packageFrame">org.biojava.bio.seq.io</a></li>
<li><a href="org/biojava/bio/seq/io/agave/package-frame.html" target="packageFrame">org.biojava.bio.seq.io.agave</a></li>
<li><a href="org/biojava/bio/seq/io/filterxml/package-frame.html" target="packageFrame">org.biojava.bio.seq.io.filterxml</a></li>
<li><a href="org/biojava/bio/seq/io/game/package-frame.html" target="packageFrame">org.biojava.bio.seq.io.game</a></li>
<li><a href="org/biojava/bio/seq/io/game12/package-frame.html" target="packageFrame">org.biojava.bio.seq.io.game12</a></li>
<li><a href="org/biojava/bio/seq/projection/package-frame.html" target="packageFrame">org.biojava.bio.seq.projection</a></li>
<li><a href="org/biojava/bio/structure/package-frame.html" target="packageFrame">org.biojava.bio.structure</a></li>
<li><a href="org/biojava/bio/structure/align/package-frame.html" target="packageFrame">org.biojava.bio.structure.align</a></li>
<li><a href="org/biojava/bio/structure/align/helper/package-frame.html" target="packageFrame">org.biojava.bio.structure.align.helper</a></li>
<li><a href="org/biojava/bio/structure/align/pairwise/package-frame.html" target="packageFrame">org.biojava.bio.structure.align.pairwise</a></li>
<li><a href="org/biojava/bio/structure/gui/package-frame.html" target="packageFrame">org.biojava.bio.structure.gui</a></li>
<li><a href="org/biojava/bio/structure/gui/events/package-frame.html" target="packageFrame">org.biojava.bio.structure.gui.events</a></li>
<li><a href="org/biojava/bio/structure/gui/util/package-frame.html" target="packageFrame">org.biojava.bio.structure.gui.util</a></li>
<li><a href="org/biojava/bio/structure/io/package-frame.html" target="packageFrame">org.biojava.bio.structure.io</a></li>
<li><a href="org/biojava/bio/structure/io/mmcif/package-frame.html" target="packageFrame">org.biojava.bio.structure.io.mmcif</a></li>
<li><a href="org/biojava/bio/structure/io/mmcif/chem/package-frame.html" target="packageFrame">org.biojava.bio.structure.io.mmcif.chem</a></li>
<li><a href="org/biojava/bio/structure/io/mmcif/model/package-frame.html" target="packageFrame">org.biojava.bio.structure.io.mmcif.model</a></li>
<li><a href="org/biojava/bio/structure/jama/package-frame.html" target="packageFrame">org.biojava.bio.structure.jama</a></li>
<li><a href="org/biojava/bio/structure/server/package-frame.html" target="packageFrame">org.biojava.bio.structure.server</a></li>
<li><a href="org/biojava/bio/symbol/package-frame.html" target="packageFrame">org.biojava.bio.symbol</a></li>
<li><a href="org/biojava/bio/taxa/package-frame.html" target="packageFrame">org.biojava.bio.taxa</a></li>
<li><a href="org/biojava/directory/package-frame.html" target="packageFrame">org.biojava.directory</a></li>
<li><a href="org/biojava/naming/package-frame.html" target="packageFrame">org.biojava.naming</a></li>
<li><a href="org/biojava/ontology/package-frame.html" target="packageFrame">org.biojava.ontology</a></li>
<li><a href="org/biojava/ontology/io/package-frame.html" target="packageFrame">org.biojava.ontology.io</a></li>
<li><a href="org/biojava/ontology/obo/package-frame.html" target="packageFrame">org.biojava.ontology.obo</a></li>
<li><a href="org/biojava/stats/svm/package-frame.html" target="packageFrame">org.biojava.stats.svm</a></li>
<li><a href="org/biojava/stats/svm/tools/package-frame.html" target="packageFrame">org.biojava.stats.svm.tools</a></li>
<li><a href="org/biojava/utils/package-frame.html" target="packageFrame">org.biojava.utils</a></li>
<li><a href="org/biojava/utils/automata/package-frame.html" target="packageFrame">org.biojava.utils.automata</a></li>
<li><a href="org/biojava/utils/cache/package-frame.html" target="packageFrame">org.biojava.utils.cache</a></li>
<li><a href="org/biojava/utils/candy/package-frame.html" target="packageFrame">org.biojava.utils.candy</a></li>
<li><a href="org/biojava/utils/io/package-frame.html" target="packageFrame">org.biojava.utils.io</a></li>
<li><a href="org/biojava/utils/lsid/package-frame.html" target="packageFrame">org.biojava.utils.lsid</a></li>
<li><a href="org/biojava/utils/math/package-frame.html" target="packageFrame">org.biojava.utils.math</a></li>
<li><a href="org/biojava/utils/net/package-frame.html" target="packageFrame">org.biojava.utils.net</a></li>
<li><a href="org/biojava/utils/process/package-frame.html" target="packageFrame">org.biojava.utils.process</a></li>
<li><a href="org/biojava/utils/regex/package-frame.html" target="packageFrame">org.biojava.utils.regex</a></li>
<li><a href="org/biojava/utils/stax/package-frame.html" target="packageFrame">org.biojava.utils.stax</a></li>
<li><a href="org/biojava/utils/walker/package-frame.html" target="packageFrame">org.biojava.utils.walker</a></li>
<li><a href="org/biojava/utils/xml/package-frame.html" target="packageFrame">org.biojava.utils.xml</a></li>
<li><a href="org/biojavax/package-frame.html" target="packageFrame">org.biojavax</a></li>
<li><a href="org/biojavax/bio/package-frame.html" target="packageFrame">org.biojavax.bio</a></li>
<li><a href="org/biojavax/bio/db/package-frame.html" target="packageFrame">org.biojavax.bio.db</a></li>
<li><a href="org/biojavax/bio/db/biosql/package-frame.html" target="packageFrame">org.biojavax.bio.db.biosql</a></li>
<li><a href="org/biojavax/bio/db/ncbi/package-frame.html" target="packageFrame">org.biojavax.bio.db.ncbi</a></li>
<li><a href="org/biojavax/bio/phylo/package-frame.html" target="packageFrame">org.biojavax.bio.phylo</a></li>
<li><a href="org/biojavax/bio/phylo/io/phylip/package-frame.html" target="packageFrame">org.biojavax.bio.phylo.io.phylip</a></li>
<li><a href="org/biojavax/bio/seq/package-frame.html" target="packageFrame">org.biojavax.bio.seq</a></li>
<li><a href="org/biojavax/bio/seq/io/package-frame.html" target="packageFrame">org.biojavax.bio.seq.io</a></li>
<li><a href="org/biojavax/bio/taxa/package-frame.html" target="packageFrame">org.biojavax.bio.taxa</a></li>
<li><a href="org/biojavax/bio/taxa/io/package-frame.html" target="packageFrame">org.biojavax.bio.taxa.io</a></li>
<li><a href="org/biojavax/ga/package-frame.html" target="packageFrame">org.biojavax.ga</a></li>
<li><a href="org/biojavax/ga/exception/package-frame.html" target="packageFrame">org.biojavax.ga.exception</a></li>
<li><a href="org/biojavax/ga/functions/package-frame.html" target="packageFrame">org.biojavax.ga.functions</a></li>
<li><a href="org/biojavax/ga/impl/package-frame.html" target="packageFrame">org.biojavax.ga.impl</a></li>
<li><a href="org/biojavax/ga/util/package-frame.html" target="packageFrame">org.biojavax.ga.util</a></li>
<li><a href="org/biojavax/ontology/package-frame.html" target="packageFrame">org.biojavax.ontology</a></li>
<li><a href="org/biojavax/utils/package-frame.html" target="packageFrame">org.biojavax.utils</a></li>
</ul>
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