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This file is part of khmer, https://github.com/dib-lab/khmer/, and is
Copyright (C) 2010-2015 Michigan State University
Copyright (C) 2015 The Regents of the University of California.
It is licensed under the three-clause BSD license; see LICENSE.
Contact: khmer-project@idyll.org
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
* Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above
copyright notice, this list of conditions and the following
disclaimer in the documentation and/or other materials provided
with the distribution.
* Neither the name of the Michigan State University nor the names
of its contributors may be used to endorse or promote products
derived from this software without specific prior written
permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
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Contact: khmer-project@idyll.org
khmer
=====
Welcome to khmer: k-mer counting, filtering and graph traversal FTW!
The official source code repository is at
https://github.com/dib-lab/khmer
and you can read the docs online here:
http://khmer.readthedocs.org/
There are two mailing lists dedicated to khmer, an announcements-only
list and a discussion list. To search their archives and sign-up for
them, please visit the following URLs:
- Discussion: http://lists.idyll.org/listinfo/khmer
- Announcements: http://lists.idyll.org/listinfo/khmer-announce
We chat at https://gitter.im/dib-lab/khmer and the maintainers can be
contacted at khmer-project@idyll.org.
For getting help please see this guide: http://khmer.readthedocs.org/en/stable/user/getting-help.html
IMPORTANT NOTE: CITE US!
------------------------
khmer is *research software*, so you should cite us when you use it
in scientific publications! Please see the `CITATION
<http://khmer.readthedocs.org/en/stable/citations.html>`__ file for
citation information.
INSTALL INSTRUCTIONS:
---------------------
khmer requires a 64-bit operating system and Python version 2.7.x, 3.3.x, or
3.4.x. Linux users will need the Python development libraries and gcc. OS X
users may need XCode installed to build from source.
In short:
``pip install khmer`` to download, build, and install the latest stable
version.
For more details see `doc/install.rst <https://khmer.readthedocs.org/en/stable/user/install.html>`_
The use of a virtualenv is recommended, see
https://virtualenv.readthedocs.org/en/latest/installation.html
khmer is under the BSD license; see doc/LICENSE.txt. Distribution,
modification and redistribution, incorporation into other software, and
pretty much everything else is allowed.
MRC 2015-09-07
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