/usr/share/dialign-tx/rand3.museq is in dialign-tx-data 1.0.2-8.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 | This is DIALIGN-T Version 0.1 - A MUltiple SEQuence alignment program.
Author: Amarendran R. Subramanian, 2003
subraman@informatik.uni-tuebingen.de
DEBUG read_scr_matrix(): Processing input file: ../conf/BLOSUM.scr
DEBUG read_diag_prob_dist(): Processing input file: ../conf/BLOSUM.diag_prob_t10
DEBUG: PROB DIST SIZE: 910600 bytes
DEBUG read_seq_col(): Processing input file: ../data/rand3
Found 13 diags in 0.220000 secs
Total Weight: 10.26685518176556044523 with pure alignment time 0.010000
First alignment after 0.010000 secs
Found 1 diags after 0.010000 secs
Total Weight: 0.00008128334568644221 with pure alignment time 0.000000
Found 0 diags after 0.000000 secs
Alignment ready!
ALIGNMENT OUTPUT:
-----------------
seq1 1 ---------- ---------- ---------- ---------- ----------
seq2 1 ---------- ---------R EFWWMWglyg ygeyqatckt gnim------
seq3 1 csctvfhkpk invaarddsR GFSMMWdgqw nqhsgdvggl ligwpyshvq
seq1 1 ---------- ---------- ---------- ---------- ----------
seq2 26 ---------- ---------- ---------- ---------- ----------
seq3 51 pgyiklafta hmhaahagwf dinhqiandy vqfgrqdsvt kwvrgvklhn
seq1 1 ---------- ---------- ---------- ---------- ----------
seq2 26 ---------- ---------- ---------K ELAMKCVVQC QPRRGLRRrp
seq3 101 kngtntpnyi mvkawprtqk sihttwvnsK PLNLSTIAPC ESQFMVREyf
seq1 1 ---------- ---------- ---------- ---------- ----------
seq2 47 kdawamgtgv ghlyptageI KTHCDRMQGH IAMDDVapch rgimwiyekm
seq3 151 aclvcntydy hidwnatlvI KTHGPHYKQI RAMQDVhiyp petyyiphfk
seq1 1 ---------- ---------- ---------- ---------- ----------
seq2 97 ieeqgqqkyk nsfiaysiSM TKGHHIRETV KYYQSFQYGL VNGYCSRNWP
seq3 201 hh-------- --------NM IKCQSLHDWV KMEYEFMWQH DTEGCVLHYM
seq1 1 ---------- ---------- ---------- ---------- ----------
seq2 147 EKEKKNRHmv ---------- ---------- ----VYSGYY HLmppvcqil
seq3 235 AYQCFCRHya diipiqgifp vgnvdpvepm cwsqAYWGFY EMaanhfang
seq1 1 ---------- ---------- ---------- ---------- ----------
seq2 173 dalwelmlet cvievpervn icggdfdayt eeqanikhHC DRWHY-----
seq3 285 c--------- ---------- ---------- --------HC SEWMYkyvps
seq1 1 ---------- ---------- ---------- ---------- ----------
seq2 218 ---------- ---------- ---------- ---------- ----------
seq3 298 ekraqnmqqs yhepcwmtpq ydhkclvdmi fftpithhms mcksecnlqi
seq1 1 ---------- ---------- ---------- ---------- ----------
seq2 218 ---------- --CAEVYigv fkv------- ---------- ----------
seq3 348 hhdyyldpgn pdCADIFyyq imhdqyrdsc lhdysywwnt hlrfaknpfc
seq1 1 ---------- ---------- ---------- ---------- ----------
seq2 229 ---------- ---------- ---------- ---------- ----------
seq3 398 rgwvvgsypk raffrclags fpmfafcmni tpwqwdfivp fdfghlefeq
seq1 1 ---------- ---------- ---------- ---------- ----------
seq2 229 --------RY FDCGKRWSTG LKKRDGrcfd ---------- ----------
seq3 448 inwyeqspRC IHCGDMMILT YNKTDGsplf ayrdpccegp aipmwmiwpq
seq1 1 ---HVMSERK RREKLNEMFL VLKSLLPSIH RVNKASILAE TIAYLKELap
seq2 251 ---HSIAERL RRERIAERIR ALQELVPTVN KTDRAAMIDE IVDYVKFL--
seq3 498 kppHIIAERK RREKLTQRFV ALSALVPGLK KMDKASVLGD ALKHIKYL--
seq1 48 vqwkhcfvfd tsmsykyrsf frshisnirk ivaqitvslr ktmseiisii
seq2 296 ---------- ---------- ---------- ---------- ----------
seq3 546 ---------- ---------- ---------- ---------- ----------
seq1 98 gehfitschn ahrsqfrpsw qqkdqkatdm aydmstcqqh hicnqilefh
seq2 296 ---------- ---------- ---------- ---------- ----------
seq3 546 ---------- ---------- ---------- ---------- ----------
seq1 148 ikyrrrncgf qyfvfangpd vqlvqcfakl esvqkgptmw sccwedvvvt
seq2 296 ---------- ---------- ---------- ---------- ----------
seq3 546 ---------- ---------- ---------- ---------- ----------
seq1 198 qtdfvcyisy mwdracvhwm rptkrlcdch lqhcfypeas tgpslwqhgd
seq2 296 ---------- ---------- ---------- ---------- ----------
seq3 546 ---------- ---------- ---------- ---------- ----------
seq1 248 gsavvwwktl dcawswgcni idsmkeprsk gwvdrevmyg swsnlggitr
seq2 296 ---------- ---------- ---------- ---------- ----------
seq3 546 ---------- ---------- ---------- ---------- ----------
seq1 298 cmfwwhpwrq imnvkrrkka pmftvqkhgp gmrnewtekr rnmggrcpvt
seq2 296 ---------- ---------- ---------- ---------- ----------
seq3 546 ---------- ---------- ---------- ---------- ----------
seq1 348 wskekkhans dcppvqycmf vqcrnrrqig wmnnnyacec irwapckmnl
seq2 296 ---------- ---------- ---------- ---------- ----------
seq3 546 ---------- ---------- ---------- ---------- ----------
seq1 398 hryvtngyla sfssylfvly hnqaqfwple wvgfgaeail iicgkcvtrh
seq2 296 ---------- ---------- ---------- ---------- ----------
seq3 546 ---------- ---------- ---------- ---------- ----------
seq1 448 nacqapvmny fhcnyteddq tvhdcisgha kthmfkamCL RYLPSMHMEH
seq2 296 ---------- ---------- ---------- --------CS LTNPQMHDFW
seq3 546 ---------- ---------- ---------- ---------- ----------
seq1 498 HWNPAYPDCp hfgnfcyavh skklfavwgr tp-------- ----------
seq2 308 QWSQLFIKCs vegawiphsf iqeiitkpqv emepnnyyfy nmaeppfifv
seq3 546 ---------- ---------- ---------- ---------- ----------
seq1 530 ---------- ---------- ---GLIVWPD QYWKFWNIN- ----------
seq2 358 ryvpfriisy vvadtvpfem gqyGCWCWIY YYPQSWHLDi hmwdwyvgyp
seq3 546 ---------- ---------- ---------- ---------- ----------
seq1 546 ---------- ---------- ---------- ---------- ----------
seq2 408 rhqkcvsnaq iftlvtrhfq dlvskgtalk dnlwpmktny sidhtmtmkm
seq3 546 ---------- ---------- ---------- ---------- ----------
seq1 546 ---------- ---------- ---------- ---------- ----------
seq2 458 veklivvnpi iyemqtiaaf aetvihpnft pfiseciqig ftphprwvhe
seq3 546 ---------- ---------- ---------- ---------- ----------
seq1 546 ---------- ---------- ---------- --------
seq2 508 ptptenvifs slrwtpsraa nsdqnkkmmv lmnvfgrk
seq3 546 ---------- ---------- ---------- --------
Total time: 0.250000 secs
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