/usr/share/gmod/chado/bin/pg2cdbi.pl is in chado-utils 1.23-5.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 | #!/usr/bin/env perl
# vim: set ft=perl ts=2 expandtab:
use strict;
use SQL::Translator;
use lib './bin';
use Skip_tables qw( @skip_tables );
unless ( scalar @ARGV > 3 ) {
die "USAGE: $0 <dbname> <username> <password> <sql file> [<sql files>]\n";
}
my $db_name = shift @ARGV;
my $db_username = shift @ARGV;
my $db_password = shift @ARGV;
my $dsn = "dbi:Pg:dbname=$db_name";
my $translator = SQL::Translator->new(
from => 'PostgreSQL',
to => 'ClassDBI',
filename => \@ARGV,
producer_args => {
db_user => $db_username,
db_pass => $db_password,
dsn => $dsn,
},
filters => [
sub {
my $schema = shift;
foreach (@skip_tables) {
$schema->drop_table($_);
}
},
],
);
$translator->format_package_name(\&x);
$translator->format_pk_name(sub {return 'id';});
$translator->format_fk_name(\&y);
my $output = $translator->translate or die $translator->error;
print $output;
sub x {
my ($name, $primary_key) = @_;
my $package_name;
my @temp = split(/_/,$name);
for(my $i = 0; $i < scalar(@temp); $i++) {
my $new_name = ucfirst($temp[$i]);
if($i == 0) {
$package_name .= $new_name;
} else {
$package_name .= "_" .$new_name;
}
}
$package_name = 'Bio::Chado::CDBI::' . $package_name;
return $package_name;
}
sub y {
my $table_name = shift;
my $field_name = shift;
$field_name =~ s/_id$//;
return $field_name;
}
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