/etc/gnome/menus.blacklist is in gnome-menus 3.13.3-6ubuntu3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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openjdk-6-java.desktop
openjdk-6-policytool.desktop
# openjdk-7
openjdk-7-java.desktop
openjdk-7-policytool.desktop
# sun-java6
sun-java6-controlpanel.desktop
sun-java6-java.desktop
sun-java6-javaws.desktop
sun-java6-jvisualvm.desktop
sun-java6-policytool.desktop
# icedtea
icedtea-netx-javaws.desktop
itweb-settings.desktop
# hplip
hplip.desktop
hp-fab.desktop
hp-sendfax.desktop
# imagemagick (Bug #677318)
display.im6.desktop
# foo2zjs
hplj1020.desktop
# kde4libs (Bug #673362)
kde4/kmailservice.desktop
kde4/ktelnetservice.desktop
# kdeaccessibility
kde4/jovieapp.desktop
kde4/kmag.desktop
kde4/kmousetool.desktop
kde4/kmouth.desktop
# kdeadmin
kde4/kuser.desktop
kde4/ksystemlog.desktop
# kdebase
kde4/dolphin.desktop
kde4/keditbookmarks.desktop
kde4/kdepasswd.desktop
kde4/kfmclient.desktop
kde4/kfmclient_dir.desktop
kde4/kfmclient_html.desktop
kde4/kfmclient_war.desktop
kde4/konqbrowser.desktop
kde4/konquerorsu.desktop
kde4/konsole.desktop
kde4/kwrite.desktop
# kdebase-runtime (Bug #673361)
kde4/nepomukbackup.desktop
kde4/nepomukcontroller.desktop
# kdebase-workspace
kde4/kfontview.desktop
kde4/ksysguard.desktop
kde4/systemsettings.desktop
# kdeedu - no equivalents in GNOME
# kdegames - only those which have equivalents in gnome-games
kde4/kblocks.desktop
kde4/kfourinline.desktop
kde4/killbots.desktop
kde4/kiriki.desktop
kde4/klickety.desktop
kde4/ksame.desktop
kde4/klines.desktop
kde4/kmahjongg.desktop
kde4/kmines.desktop
kde4/kpat.desktop
kde4/kreversi.desktop
kde4/ksudoku.desktop
kde4/kdesnake.desktop
kde4/ktron.desktop
# kdegraphics
kde4/gwenview.desktop
kde4/kcolorchooser.desktop
kde4/kolourpaint.desktop
kde4/kruler.desktop
kde4/ksnapshot.desktop
kde4/okular.desktop
kde4/okularApplication_comicbook.desktop
kde4/okularApplication_dvi.desktop
kde4/okularApplication_fax.desktop
kde4/okularApplication_fb.desktop
kde4/okularApplication_ghostview.desktop
kde4/okularApplication_kimgio.desktop
kde4/okularApplication_mobi.desktop
kde4/okularApplication_ooo.desktop
kde4/okularApplication_pdf.desktop
kde4/okularApplication_plucker.desktop
kde4/okularApplication_xps.desktop
kde4/okularApplication_chm.desktop
kde4/okularApplication_djvu.desktop
kde4/okularApplication_epub.desktop
kde4/okularApplication_tiff.desktop
# kdemultimedia
kde4/dragonplayer.desktop
kde4/juk.desktop
kde4/kmix.desktop
kde4/kscd.desktop
# kdenetwork
kde4/kget.desktop
kde4/kopete.desktop
kde4/kppplogview.desktop
kde4/Kppp.desktop
kde4/krdc.desktop
kde4/krfb.desktop
# kdepim
kde4/akonadiconsole.desktop
kde4/akregator.desktop
kde4/blogilo.desktop
kde4/kaddressbook.desktop
kde4/kalarm.desktop
kde4/groupwarewizard.desktop
kde4/Kjots.desktop
kde4/kleopatra.desktop
kde4/kleopatra_import.desktop
kde4/KMail.desktop
kde4/kmail_view.desktop
kde4/KNode.desktop
kde4/knotes.desktop
kde4/konsolekalendar.desktop
kde4/Kontact.desktop
kde4/kontact-admin.desktop
kde4/korganizer-import.desktop
kde4/korganizer.desktop
kde4/ktimetracker.desktop
kde4/akonaditray.desktop
# kdesdk
kde4/cervisia.desktop
kde4/kapptemplate.desktop
kde4/ktesnippets_editor.desktop
kde4/kate.desktop
kde4/kcachegrind.desktop
kde4/kompare.desktop
kde4/kuiviewer.desktop
kde4/lokalize.desktop
kde4/okteta.desktop
kde4/umbrello.desktop
# kdetoys
kde4/amor.desktop
kde4/kteatime.desktop
# kdeutils
kde4/ark.desktop
kde4/filelight.desktop
kde4/kcalc.desktop
kde4/KCharSelect.desktop
kde4/kwikdisk.desktop
kde4/kdf.desktop
kde4/KFloppy.desktop
kde4/kgpg.desktop
kde4/krcdnotifieritem.desktop
kde4/ktimer.desktop
kde4/kwalletmanager.desktop
kde4/kwalletmanager-kwalletd.desktop
kde4/sweeper.desktop
# kdewebdev
kde4/kfilereplace.desktop
kde4/kimagemapeditor.desktop
kde4/klinkstatus.desktop
# Other KDE-only stuff that have GNOME equivalents in the standard install
Kino.desktop
qt3config.desktop
qt4config.desktop
qtconfig-qt4.desktop
# Viewers only belong in the MIME associations, not in the menu
djvulibre-djview3.desktop
djvulibre-djview4.desktop
xpdf.desktop
# Bazaar preferences don't belong in the menu
bazaar-properties.desktop
# Neither do notification area icons, they should be autostarted on demand
bzr-notify.desktop
# xscreensaver
xscreensaver.desktop
xscreensaver-properties.desktop
screensavers/tessellimage.desktop
screensavers/distort.desktop
screensavers/fuzzyflakes.desktop
screensavers/xlyap.desktop
screensavers/ripples.desktop
screensavers/abstractile.desktop
screensavers/slidescreen.desktop
screensavers/shadebobs.desktop
screensavers/fiberlamp.desktop
screensavers/metaballs.desktop
screensavers/hexadrop.desktop
screensavers/cwaves.desktop
screensavers/galaxy.desktop
screensavers/deco.desktop
screensavers/swirl.desktop
screensavers/penrose.desktop
screensavers/m6502.desktop
# IDLE - we don't need one entry for each Python version
idle-python2.5.desktop
idle-python2.6.desktop
# XTerm
debian-xterm.desktop
debian-uxterm.desktop
# XFCE (Bug #673363, #673360)
Thunar-bulk-rename.desktop
Thunar.desktop
thunar-volman-settings.desktop
# ViM
vim.desktop
# prerex
prerex.desktop
vprerex.desktop
# NetworkManager (already in control-center)
nm-connection-editor.desktop
# Orca (already in accessibility menu)
orca.desktop
# GNOME power manager (used from other places)
gnome-power-statistics.desktop
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