/usr/lib/R/site-library/BSgenome/INDEX is in r-bioc-bsgenome 1.30.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | BSParams-class Class "BSParams"
BSgenome-class BSgenome objects
BSgenome-utils BSgenome utilities
BSgenomeForge The BSgenomeForge functions
GenomeData-class Data on the genome
GenomeDataList-class List of GenomeData objects
GenomeDescription-class
GenomeDescription objects
available.genomes Find available/installed genomes
bsapply bsapply
gdReduce Reduces arguments to a single GenomeData
instance
gdapply Applies a function to elements of a GenomeData
getSeq,BSgenome-method
getSeq method for BSgenome objects
injectSNPs SNP injection
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