/usr/lib/python2.7/dist-packages/chempy/brick.py is in pymol 1.7.0.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 | #A* -------------------------------------------------------------------
#B* This file contains source code for the PyMOL computer program
#C* copyright 1998-2000 by Warren Lyford Delano of DeLano Scientific.
#D* -------------------------------------------------------------------
#E* It is unlawful to modify or remove this copyright notice.
#F* -------------------------------------------------------------------
#G* Please see the accompanying LICENSE file for further information.
#H* -------------------------------------------------------------------
#I* Additional authors of this source file include:
#-*
#-*
#-*
#Z* -------------------------------------------------------------------
#from Numeric import *
from numpy import *
import copy
class Brick:
def __init__(self):
self.valid = None
def setup_from_min_max(self,mn,mx,grid,buffer=0.0):
self.origin = [
mn[0]-buffer,
mn[1]-buffer,
mn[2]-buffer
]
self.range = [
(mx[0]-mn[0])+2*buffer,
(mx[1]-mn[1])+2*buffer,
(mx[2]-mn[2])+2*buffer
]
self.dim = [
1 + int(self.range[0]/grid[0]),
1 + int(self.range[1]/grid[1]),
1 + int(self.range[2]/grid[2])
]
self.grid = copy.deepcopy(grid)
self.lvl = zeros(self.dim,float)
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