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%# OdePkg - A package for solving ordinary differential equations and more
%#
%# This program is free software; you can redistribute it and/or modify
%# it under the terms of the GNU General Public License as published by
%# the Free Software Foundation; either version 2 of the License, or
%# (at your option) any later version.
%#
%# This program is distributed in the hope that it will be useful,
%# but WITHOUT ANY WARRANTY; without even the implied warranty of
%# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
%# GNU General Public License for more details.
%#
%# You should have received a copy of the GNU General Public License
%# along with this program; If not, see <http://www.gnu.org/licenses/>.
%# -*- texinfo -*-
%# @deftypefn {Function File} {[@var{}] =} ode54d (@var{@@fun}, @var{slot}, @var{init}, @var{lags}, @var{hist}, [@var{opt}], [@var{par1}, @var{par2}, @dots{}])
%# @deftypefnx {Command} {[@var{sol}] =} ode54d (@var{@@fun}, @var{slot}, @var{init}, @var{lags}, @var{hist}, [@var{opt}], [@var{par1}, @var{par2}, @dots{}])
%# @deftypefnx {Command} {[@var{t}, @var{y}, [@var{xe}, @var{ye}, @var{ie}]] =} ode54d (@var{@@fun}, @var{slot}, @var{init}, @var{lags}, @var{hist}, [@var{opt}], [@var{par1}, @var{par2}, @dots{}])
%#
%# This function file can be used to solve a set of non--stiff delay differential equations (non--stiff DDEs) with a modified version of the well known explicit Runge--Kutta method of order (2,3).
%#
%# If this function is called with no return argument then plot the solution over time in a figure window while solving the set of DDEs that are defined in a function and specified by the function handle @var{@@fun}. The second input argument @var{slot} is a double vector that defines the time slot, @var{init} is a double vector that defines the initial values of the states, @var{lags} is a double vector that describes the lags of time, @var{hist} is a double matrix and describes the history of the DDEs, @var{opt} can optionally be a structure array that keeps the options created with the command @command{odeset} and @var{par1}, @var{par2}, @dots{} can optionally be other input arguments of any type that have to be passed to the function defined by @var{@@fun}.
%#
%# In other words, this function will solve a problem of the form
%# @example
%# dy/dt = fun (t, y(t), y(t-lags(1), y(t-lags(2), @dots{})))
%# y(slot(1)) = init
%# y(slot(1)-lags(1)) = hist(1), y(slot(1)-lags(2)) = hist(2), @dots{}
%# @end example
%#
%# If this function is called with one return argument then return the solution @var{sol} of type structure array after solving the set of DDEs. The solution @var{sol} has the fields @var{x} of type double column vector for the steps chosen by the solver, @var{y} of type double column vector for the solutions at each time step of @var{x}, @var{solver} of type string for the solver name and optionally the extended time stamp information @var{xe}, the extended solution information @var{ye} and the extended index information @var{ie} all of type double column vector that keep the informations of the event function if an event function handle is set in the option argument @var{opt}.
%#
%# If this function is called with more than one return argument then return the time stamps @var{t}, the solution values @var{y} and optionally the extended time stamp information @var{xe}, the extended solution information @var{ye} and the extended index information @var{ie} all of type double column vector.
%#
%# For example:
%# @itemize @minus
%# @item
%# the following code solves an anonymous implementation of a chaotic behavior
%#
%# @example
%# fcao = @@(vt, vy, vz) [2 * vz / (1 + vz^9.65) - vy];
%#
%# vopt = odeset ("NormControl", "on", "RelTol", 1e-3);
%# vsol = ode54d (fcao, [0, 100], 0.5, 2, 0.5, vopt);
%#
%# vlag = interp1 (vsol.x, vsol.y, vsol.x - 2);
%# plot (vsol.y, vlag); legend ("fcao (t,y,z)");
%# @end example
%#
%# @item
%# to solve the following problem with two delayed state variables
%#
%# @example
%# d y1(t)/dt = -y1(t)
%# d y2(t)/dt = -y2(t) + y1(t-5)
%# d y3(t)/dt = -y3(t) + y2(t-10)*y1(t-10)
%# @end example
%#
%# one might do the following
%#
%# @example
%# function f = fun (t, y, yd)
%# f(1) = -y(1); %% y1' = -y1(t)
%# f(2) = -y(2) + yd(1,1); %% y2' = -y2(t) + y1(t-lags(1))
%# f(3) = -y(3) + yd(2,2)*yd(1,2); %% y3' = -y3(t) + y2(t-lags(2))*y1(t-lags(2))
%# endfunction
%# T = [0,20]
%# res = ode54d (@@fun, T, [1;1;1], [5, 10], ones (3,2));
%# @end example
%#
%# @end itemize
%# @end deftypefn
%#
%# @seealso{odepkg}
function [varargout] = ode54d (vfun, vslot, vinit, vlags, vhist, varargin)
if (nargin == 0) %# Check number and types of all input arguments
help ('ode54d');
error ('OdePkg:InvalidArgument', ...
'Number of input arguments must be greater than zero');
elseif (nargin < 5)
print_usage;
elseif (~isa (vfun, 'function_handle'))
error ('OdePkg:InvalidArgument', ...
'First input argument must be a valid function handle');
elseif (~isvector (vslot) || length (vslot) < 2)
error ('OdePkg:InvalidArgument', ...
'Second input argument must be a valid vector');
elseif (~isvector (vinit) || ~isnumeric (vinit))
error ('OdePkg:InvalidArgument', ...
'Third input argument must be a valid numerical value');
elseif (~isvector (vlags) || ~isnumeric (vlags))
error ('OdePkg:InvalidArgument', ...
'Fourth input argument must be a valid numerical value');
elseif ~(isnumeric (vhist) || isa (vhist, 'function_handle'))
error ('OdePkg:InvalidArgument', ...
'Fifth input argument must either be numeric or a function handle');
elseif (nargin >= 6)
if (~isstruct (varargin{1}))
%# varargin{1:len} are parameters for vfun
vodeoptions = odeset;
vfunarguments = varargin;
elseif (length (varargin) > 1)
%# varargin{1} is an OdePkg options structure vopt
vodeoptions = odepkg_structure_check (varargin{1}, 'ode54d');
vfunarguments = {varargin{2:length(varargin)}};
else %# if (isstruct (varargin{1}))
vodeoptions = odepkg_structure_check (varargin{1}, 'ode54d');
vfunarguments = {};
end
else %# if (nargin == 5)
vodeoptions = odeset;
vfunarguments = {};
end
%# Start preprocessing, have a look which options have been set in
%# vodeoptions. Check if an invalid or unused option has been set and
%# print warnings.
vslot = vslot(:)'; %# Create a row vector
vinit = vinit(:)'; %# Create a row vector
vlags = vlags(:)'; %# Create a row vector
%# Check if the user has given fixed points of time
if (length (vslot) > 2), vstepsizegiven = true; %# Step size checking
else vstepsizegiven = false; end
%# Get the default options that can be set with 'odeset' temporarily
vodetemp = odeset;
%# Implementation of the option RelTol has been finished. This option
%# can be set by the user to another value than default value.
if (isempty (vodeoptions.RelTol) && ~vstepsizegiven)
vodeoptions.RelTol = 1e-6;
warning ('OdePkg:InvalidOption', ...
'Option "RelTol" not set, new value %f is used', vodeoptions.RelTol);
elseif (~isempty (vodeoptions.RelTol) && vstepsizegiven)
warning ('OdePkg:InvalidOption', ...
'Option "RelTol" will be ignored if fixed time stamps are given');
%# This implementation has been added to odepkg_structure_check.m
%# elseif (~isscalar (vodeoptions.RelTol) && ~vstepsizegiven)
%# error ('OdePkg:InvalidOption', ...
%# 'Option "RelTol" must be set to a scalar value for this solver');
end
%# Implementation of the option AbsTol has been finished. This option
%# can be set by the user to another value than default value.
if (isempty (vodeoptions.AbsTol) && ~vstepsizegiven)
vodeoptions.AbsTol = 1e-6;
warning ('OdePkg:InvalidOption', ...
'Option "AbsTol" not set, new value %f is used', vodeoptions.AbsTol);
elseif (~isempty (vodeoptions.AbsTol) && vstepsizegiven)
warning ('OdePkg:InvalidOption', ...
'Option "AbsTol" will be ignored if fixed time stamps are given');
else %# create column vector
vodeoptions.AbsTol = vodeoptions.AbsTol(:);
end
%# Implementation of the option NormControl has been finished. This
%# option can be set by the user to another value than default value.
if (strcmp (vodeoptions.NormControl, 'on')), vnormcontrol = true;
else vnormcontrol = false;
end
%# Implementation of the option NonNegative has been finished. This
%# option can be set by the user to another value than default value.
if (~isempty (vodeoptions.NonNegative))
if (isempty (vodeoptions.Mass)), vhavenonnegative = true;
else
vhavenonnegative = false;
warning ('OdePkg:InvalidOption', ...
'Option "NonNegative" will be ignored if mass matrix is set');
end
else vhavenonnegative = false;
end
%# Implementation of the option OutputFcn has been finished. This
%# option can be set by the user to another value than default value.
if (isempty (vodeoptions.OutputFcn) && nargout == 0)
vodeoptions.OutputFcn = @odeplot;
vhaveoutputfunction = true;
elseif (isempty (vodeoptions.OutputFcn)), vhaveoutputfunction = false;
else vhaveoutputfunction = true;
end
%# Implementation of the option OutputSel has been finished. This
%# option can be set by the user to another value than default value.
if (~isempty (vodeoptions.OutputSel)), vhaveoutputselection = true;
else vhaveoutputselection = false; end
%# Implementation of the option Refine has been finished. This option
%# can be set by the user to another value than default value.
if (isequal (vodeoptions.Refine, vodetemp.Refine)), vhaverefine = true;
else vhaverefine = false; end
%# Implementation of the option Stats has been finished. This option
%# can be set by the user to another value than default value.
%# Implementation of the option InitialStep has been finished. This
%# option can be set by the user to another value than default value.
if (isempty (vodeoptions.InitialStep) && ~vstepsizegiven)
vodeoptions.InitialStep = abs (vslot(1,1) - vslot(1,2)) / 10;
vodeoptions.InitialStep = vodeoptions.InitialStep / 10^vodeoptions.Refine;
warning ('OdePkg:InvalidOption', ...
'Option "InitialStep" not set, new value %f is used', vodeoptions.InitialStep);
end
%# Implementation of the option MaxStep has been finished. This option
%# can be set by the user to another value than default value.
if (isempty (vodeoptions.MaxStep) && ~vstepsizegiven)
vodeoptions.MaxStep = abs (vslot(1,1) - vslot(1,length (vslot))) / 10;
%# vodeoptions.MaxStep = vodeoptions.MaxStep / 10^vodeoptions.Refine;
warning ('OdePkg:InvalidOption', ...
'Option "MaxStep" not set, new value %f is used', vodeoptions.MaxStep);
end
%# Implementation of the option Events has been finished. This option
%# can be set by the user to another value than default value.
if (~isempty (vodeoptions.Events)), vhaveeventfunction = true;
else vhaveeventfunction = false; end
%# The options 'Jacobian', 'JPattern' and 'Vectorized' will be ignored
%# by this solver because this solver uses an explicit Runge-Kutta
%# method and therefore no Jacobian calculation is necessary
if (~isequal (vodeoptions.Jacobian, vodetemp.Jacobian))
warning ('OdePkg:InvalidOption', ...
'Option "Jacobian" will be ignored by this solver');
end
if (~isequal (vodeoptions.JPattern, vodetemp.JPattern))
warning ('OdePkg:InvalidOption', ...
'Option "JPattern" will be ignored by this solver');
end
if (~isequal (vodeoptions.Vectorized, vodetemp.Vectorized))
warning ('OdePkg:InvalidOption', ...
'Option "Vectorized" will be ignored by this solver');
end
if (~isequal (vodeoptions.NewtonTol, vodetemp.NewtonTol))
warning ('OdePkg:InvalidArgument', ...
'Option "NewtonTol" will be ignored by this solver');
end
if (~isequal (vodeoptions.MaxNewtonIterations,...
vodetemp.MaxNewtonIterations))
warning ('OdePkg:InvalidArgument', ...
'Option "MaxNewtonIterations" will be ignored by this solver');
end
%# Implementation of the option Mass has been finished. This option
%# can be set by the user to another value than default value.
if (~isempty (vodeoptions.Mass) && isnumeric (vodeoptions.Mass))
vhavemasshandle = false; vmass = vodeoptions.Mass; %# constant mass
elseif (isa (vodeoptions.Mass, 'function_handle'))
vhavemasshandle = true; %# mass defined by a function handle
else %# no mass matrix - creating a diag-matrix of ones for mass
vhavemasshandle = false; %# vmass = diag (ones (length (vinit), 1), 0);
end
%# Implementation of the option MStateDependence has been finished.
%# This option can be set by the user to another value than default
%# value.
if (strcmp (vodeoptions.MStateDependence, 'none'))
vmassdependence = false;
else vmassdependence = true;
end
%# Other options that are not used by this solver. Print a warning
%# message to tell the user that the option(s) is/are ignored.
if (~isequal (vodeoptions.MvPattern, vodetemp.MvPattern))
warning ('OdePkg:InvalidOption', ...
'Option "MvPattern" will be ignored by this solver');
end
if (~isequal (vodeoptions.MassSingular, vodetemp.MassSingular))
warning ('OdePkg:InvalidOption', ...
'Option "MassSingular" will be ignored by this solver');
end
if (~isequal (vodeoptions.InitialSlope, vodetemp.InitialSlope))
warning ('OdePkg:InvalidOption', ...
'Option "InitialSlope" will be ignored by this solver');
end
if (~isequal (vodeoptions.MaxOrder, vodetemp.MaxOrder))
warning ('OdePkg:InvalidOption', ...
'Option "MaxOrder" will be ignored by this solver');
end
if (~isequal (vodeoptions.BDF, vodetemp.BDF))
warning ('OdePkg:InvalidOption', ...
'Option "BDF" will be ignored by this solver');
end
%# Starting the initialisation of the core solver ode54d
vtimestamp = vslot(1,1); %# timestamp = start time
vtimelength = length (vslot); %# length needed if fixed steps
vtimestop = vslot(1,vtimelength); %# stop time = last value
if (~vstepsizegiven)
vstepsize = vodeoptions.InitialStep;
vminstepsize = (vtimestop - vtimestamp) / (1/eps);
else %# If step size is given then use the fixed time steps
vstepsize = abs (vslot(1,1) - vslot(1,2));
vminstepsize = eps; %# vslot(1,2) - vslot(1,1) - eps;
end
vretvaltime = vtimestamp; %# first timestamp output
if (vhaveoutputselection) %# first solution output
vretvalresult = vinit(vodeoptions.OutputSel);
else vretvalresult = vinit;
end
%# Initialize the OutputFcn
if (vhaveoutputfunction)
feval (vodeoptions.OutputFcn, vslot', ...
vretvalresult', 'init', vfunarguments{:});
end
%# Initialize the History
if (isnumeric (vhist))
vhmat = vhist;
vhavehistnumeric = true;
else %# it must be a function handle
for vcnt = 1:length (vlags);
vhmat(:,vcnt) = feval (vhist, (vslot(1)-vlags(vcnt)), vfunarguments{:});
end
vhavehistnumeric = false;
end
%# Initialize DDE variables for history calculation
vsaveddetime = [vtimestamp - vlags, vtimestamp]';
vsaveddeinput = [vhmat, vinit']';
vsavedderesult = [vhmat, vinit']';
%# Initialize the EventFcn
if (vhaveeventfunction)
odepkg_event_handle (vodeoptions.Events, vtimestamp, ...
{vretvalresult', vhmat}, 'init', vfunarguments{:});
end
vpow = 1/5; %# 20071016, reported by Luis Randez
va = [0, 0, 0, 0, 0, 0; %# The Dormand-Prince 5(4) coefficients
1/5, 0, 0, 0, 0, 0; %# Coefficients proved on 20060827
3/40, 9/40, 0, 0, 0, 0; %# See p.91 in Ascher & Petzold
44/45, -56/15, 32/9, 0, 0, 0;
19372/6561, -25360/2187, 64448/6561, -212/729, 0, 0;
9017/3168, -355/33, 46732/5247, 49/176, -5103/18656, 0;
35/384, 0, 500/1113, 125/192, -2187/6784, 11/84];
%# 4th and 5th order b-coefficients
vb4 = [35/384; 0; 500/1113; 125/192; -2187/6784; 11/84; 0];
vb5 = [5179/57600; 0; 7571/16695; 393/640; -92097/339200; 187/2100; 1/40];
vc = sum (va, 2);
%# The solver main loop - stop if the endpoint has been reached
vcntloop = 2; vcntcycles = 1; vu = vinit; vk = vu' * zeros(1,7);
vcntiter = 0; vunhandledtermination = true;
while ((vtimestamp < vtimestop && vstepsize >= vminstepsize))
%# Hit the endpoint of the time slot exactely
if ((vtimestamp + vstepsize) > vtimestop)
vstepsize = vtimestop - vtimestamp; end
%# Estimate the seven results when using this solver
for j = 1:7
vthetime = vtimestamp + vc(j,1) * vstepsize;
vtheinput = vu' + vstepsize * vk(:,1:j-1) * va(j,1:j-1)';
%# Claculate the history values (or get them from an external
%# function) that are needed for the next step of solving
if (vhavehistnumeric)
for vcnt = 1:length (vlags)
%# Direct implementation of a 'quadrature cubic Hermite interpolation'
%# found at the Faculty for Mathematics of the University of Stuttgart
%# http://mo.mathematik.uni-stuttgart.de/inhalt/aussage/aussage1269
vnumb = find (vthetime - vlags(vcnt) >= vsaveddetime);
velem = min (vnumb(end), length (vsaveddetime) - 1);
vstep = vsaveddetime(velem+1) - vsaveddetime(velem);
vdiff = (vthetime - vlags(vcnt) - vsaveddetime(velem)) / vstep;
vsubs = 1 - vdiff;
%# Calculation of the coefficients for the interpolation algorithm
vua = (1 + 2 * vdiff) * vsubs^2;
vub = (3 - 2 * vdiff) * vdiff^2;
vva = vstep * vdiff * vsubs^2;
vvb = -vstep * vsubs * vdiff^2;
vhmat(:,vcnt) = vua * vsaveddeinput(velem,:)' + ...
vub * vsaveddeinput(velem+1,:)' + ...
vva * vsavedderesult(velem,:)' + ...
vvb * vsavedderesult(velem+1,:)';
end
else %# the history must be a function handle
for vcnt = 1:length (vlags)
vhmat(:,vcnt) = feval ...
(vhist, vthetime - vlags(vcnt), vfunarguments{:});
end
end
if (vhavemasshandle) %# Handle only the dynamic mass matrix,
if (vmassdependence) %# constant mass matrices have already
vmass = feval ... %# been set before (if any)
(vodeoptions.Mass, vthetime, vtheinput, vfunarguments{:});
else %# if (vmassdependence == false)
vmass = feval ... %# then we only have the time argument
(vodeoptions.Mass, vthetime, vfunarguments{:});
end
vk(:,j) = vmass \ feval ...
(vfun, vthetime, vtheinput, vhmat, vfunarguments{:});
else
vk(:,j) = feval ...
(vfun, vthetime, vtheinput, vhmat, vfunarguments{:});
end
end
%# Compute the 4th and the 5th order estimation
y4 = vu' + vstepsize * (vk * vb4);
y5 = vu' + vstepsize * (vk * vb5);
if (vhavenonnegative)
vu(vodeoptions.NonNegative) = abs (vu(vodeoptions.NonNegative));
y4(vodeoptions.NonNegative) = abs (y4(vodeoptions.NonNegative));
y5(vodeoptions.NonNegative) = abs (y5(vodeoptions.NonNegative));
end
vSaveVUForRefine = vu;
%# Calculate the absolute local truncation error and the acceptable error
if (~vstepsizegiven)
if (~vnormcontrol)
vdelta = y5 - y4;
vtau = max (vodeoptions.RelTol * vu', vodeoptions.AbsTol);
else
vdelta = norm (y5 - y4, Inf);
vtau = max (vodeoptions.RelTol * max (norm (vu', Inf), 1.0), ...
vodeoptions.AbsTol);
end
else %# if (vstepsizegiven == true)
vdelta = 1; vtau = 2;
end
%# If the error is acceptable then update the vretval variables
if (all (vdelta <= vtau))
vtimestamp = vtimestamp + vstepsize;
vu = y5'; %# MC2001: the higher order estimation as "local extrapolation"
vretvaltime(vcntloop,:) = vtimestamp;
if (vhaveoutputselection)
vretvalresult(vcntloop,:) = vu(vodeoptions.OutputSel);
else
vretvalresult(vcntloop,:) = vu;
end
vcntloop = vcntloop + 1; vcntiter = 0;
%# Update DDE values for next history calculation
vsaveddetime(end+1) = vtimestamp;
vsaveddeinput(end+1,:) = vtheinput';
vsavedderesult(end+1,:) = vu;
%# Call plot only if a valid result has been found, therefore this
%# code fragment has moved here. Stop integration if plot function
%# returns false
if (vhaveoutputfunction)
if (vhaverefine) %# Do interpolation
for vcnt = 0:vodeoptions.Refine %# Approximation between told and t
vapproxtime = (vcnt + 1) * vstepsize / (vodeoptions.Refine + 2);
vapproxvals = vSaveVUForRefine' + vapproxtime * (vk * vb5);
if (vhaveoutputselection)
vapproxvals = vapproxvals(vodeoptions.OutputSel);
end
feval (vodeoptions.OutputFcn, (vtimestamp - vstepsize) + vapproxtime, ...
vapproxvals, [], vfunarguments{:});
end
end
vpltret = feval (vodeoptions.OutputFcn, vtimestamp, ...
vretvalresult(vcntloop-1,:)', [], vfunarguments{:});
if (vpltret), vunhandledtermination = false; break; end
end
%# Call event only if a valid result has been found, therefore this
%# code fragment has moved here. Stop integration if veventbreak is
%# true
if (vhaveeventfunction)
vevent = ...
odepkg_event_handle (vodeoptions.Events, vtimestamp, ...
{vu(:), vhmat}, [], vfunarguments{:});
if (~isempty (vevent{1}) && vevent{1} == 1)
vretvaltime(vcntloop-1,:) = vevent{3}(end,:);
vretvalresult(vcntloop-1,:) = vevent{4}(end,:);
vunhandledtermination = false; break;
end
end
end %# If the error is acceptable ...
%# Update the step size for the next integration step
if (~vstepsizegiven)
%# vdelta may be 0 or even negative - could be an iteration problem
vdelta = max (vdelta, eps);
vstepsize = min (vodeoptions.MaxStep, ...
min (0.8 * vstepsize * (vtau ./ vdelta) .^ vpow));
elseif (vstepsizegiven)
if (vcntloop < vtimelength)
vstepsize = vslot(1,vcntloop-1) - vslot(1,vcntloop-2);
end
end
%# Update counters that count the number of iteration cycles
vcntcycles = vcntcycles + 1; %# Needed for postprocessing
vcntiter = vcntiter + 1; %# Needed to find iteration problems
%# Stop solving because the last 1000 steps no successful valid
%# value has been found
if (vcntiter >= 5000)
error (['Solving has not been successful. The iterative', ...
' integration loop exited at time t = %f before endpoint at', ...
' tend = %f was reached. This happened because the iterative', ...
' integration loop does not find a valid solution at this time', ...
' stamp. Try to reduce the value of "InitialStep" and/or', ...
' "MaxStep" with the command "odeset".\n'], vtimestamp, vtimestop);
end
end %# The main loop
%# Check if integration of the ode has been successful
if (vtimestamp < vtimestop)
if (vunhandledtermination == true)
error (['Solving has not been successful. The iterative', ...
' integration loop exited at time t = %f', ...
' before endpoint at tend = %f was reached. This may', ...
' happen if the stepsize grows smaller than defined in', ...
' vminstepsize. Try to reduce the value of "InitialStep" and/or', ...
' "MaxStep" with the command "odeset".\n'], vtimestamp, vtimestop);
else
warning ('OdePkg:HideWarning', ...
['Solver has been stopped by a call of "break" in', ...
' the main iteration loop at time t = %f before endpoint at', ...
' tend = %f was reached. This may happen because the @odeplot', ...
' function returned "true" or the @event function returned "true".'], ...
vtimestamp, vtimestop);
end
end
%# Postprocessing, do whatever when terminating integration algorithm
if (vhaveoutputfunction) %# Cleanup plotter
feval (vodeoptions.OutputFcn, vtimestamp, ...
vretvalresult(vcntloop-1,:)', 'done', vfunarguments{:});
end
if (vhaveeventfunction) %# Cleanup event function handling
odepkg_event_handle (vodeoptions.Events, vtimestamp, ...
{vretvalresult(vcntloop-1,:), vhmat}, 'done', vfunarguments{:});
end
%# Print additional information if option Stats is set
if (strcmp (vodeoptions.Stats, 'on'))
vhavestats = true;
vnsteps = vcntloop-2; %# vcntloop from 2..end
vnfailed = (vcntcycles-1)-(vcntloop-2)+1; %# vcntcycl from 1..end
vnfevals = 7*(vcntcycles-1); %# number of ode evaluations
vndecomps = 0; %# number of LU decompositions
vnpds = 0; %# number of partial derivatives
vnlinsols = 0; %# no. of solutions of linear systems
%# Print cost statistics if no output argument is given
if (nargout == 0)
vmsg = fprintf (1, 'Number of successful steps: %d', vnsteps);
vmsg = fprintf (1, 'Number of failed attempts: %d', vnfailed);
vmsg = fprintf (1, 'Number of function calls: %d', vnfevals);
end
else vhavestats = false;
end
if (nargout == 1) %# Sort output variables, depends on nargout
varargout{1}.x = vretvaltime; %# Time stamps are saved in field x
varargout{1}.y = vretvalresult; %# Results are saved in field y
varargout{1}.solver = 'ode54d'; %# Solver name is saved in field solver
if (vhaveeventfunction)
varargout{1}.ie = vevent{2}; %# Index info which event occured
varargout{1}.xe = vevent{3}; %# Time info when an event occured
varargout{1}.ye = vevent{4}; %# Results when an event occured
end
if (vhavestats)
varargout{1}.stats = struct;
varargout{1}.stats.nsteps = vnsteps;
varargout{1}.stats.nfailed = vnfailed;
varargout{1}.stats.nfevals = vnfevals;
varargout{1}.stats.npds = vnpds;
varargout{1}.stats.ndecomps = vndecomps;
varargout{1}.stats.nlinsols = vnlinsols;
end
elseif (nargout == 2)
varargout{1} = vretvaltime; %# Time stamps are first output argument
varargout{2} = vretvalresult; %# Results are second output argument
elseif (nargout == 5)
varargout{1} = vretvaltime; %# Same as (nargout == 2)
varargout{2} = vretvalresult; %# Same as (nargout == 2)
varargout{3} = []; %# LabMat doesn't accept lines like
varargout{4} = []; %# varargout{3} = varargout{4} = [];
varargout{5} = [];
if (vhaveeventfunction)
varargout{3} = vevent{3}; %# Time info when an event occured
varargout{4} = vevent{4}; %# Results when an event occured
varargout{5} = vevent{2}; %# Index info which event occured
end
%# else nothing will be returned, varargout{1} undefined
end
%! # We are using a "pseudo-DDE" implementation for all tests that
%! # are done for this function. We also define an Events and a
%! # pseudo-Mass implementation. For further tests we also define a
%! # reference solution (computed at high accuracy) and an OutputFcn.
%!function [vyd] = fexp (vt, vy, vz, varargin)
%! vyd(1,1) = exp (- vt) - vz(1); %# The DDEs that are
%! vyd(2,1) = vy(1) - vz(2); %# used for all examples
%!function [vval, vtrm, vdir] = feve (vt, vy, vz, varargin)
%! vval = fexp (vt, vy, vz); %# We use the derivatives
%! vtrm = zeros (2,1); %# don't stop solving here
%! vdir = ones (2,1); %# in positive direction
%!function [vval, vtrm, vdir] = fevn (vt, vy, vz, varargin)
%! vval = fexp (vt, vy, vz); %# We use the derivatives
%! vtrm = ones (2,1); %# stop solving here
%! vdir = ones (2,1); %# in positive direction
%!function [vmas] = fmas (vt, vy, vz, varargin)
%! vmas = [1, 0; 0, 1]; %# Dummy mass matrix for tests
%!function [vmas] = fmsa (vt, vy, vz, varargin)
%! vmas = sparse ([1, 0; 0, 1]); %# A dummy sparse matrix
%!function [vref] = fref () %# The reference solution
%! vref = [0.12194462133618, 0.01652432423938];
%!function [vout] = fout (vt, vy, vflag, varargin)
%! if (regexp (char (vflag), 'init') == 1)
%! if (any (size (vt) ~= [2, 1])) error ('"fout" step "init"'); end
%! elseif (isempty (vflag))
%! if (any (size (vt) ~= [1, 1])) error ('"fout" step "calc"'); end
%! vout = false;
%! elseif (regexp (char (vflag), 'done') == 1)
%! if (any (size (vt) ~= [1, 1])) error ('"fout" step "done"'); end
%! else error ('"fout" invalid vflag');
%! end
%!
%! %# Turn off output of warning messages for all tests, turn them on
%! %# again if the last test is called
%!error %# input argument number one
%! warning ('off', 'OdePkg:InvalidOption');
%! B = ode54d (1, [0 5], [1; 0], 1, [1; 0]);
%!error %# input argument number two
%! B = ode54d (@fexp, 1, [1; 0], 1, [1; 0]);
%!error %# input argument number three
%! B = ode54d (@fexp, [0 5], 1, 1, [1; 0]);
%!error %# input argument number four
%! B = ode54d (@fexp, [0 5], [1; 0], [1; 1], [1; 0]);
%!error %# input argument number five
%! B = ode54d (@fexp, [0 5], [1; 0], 1, 1);
%!test %# one output argument
%! vsol = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0]);
%! assert ([vsol.x(end), vsol.y(end,:)], [5, fref], 1e-1);
%! assert (isfield (vsol, 'solver'));
%! assert (vsol.solver, 'ode54d');
%!test %# two output arguments
%! [vt, vy] = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0]);
%! assert ([vt(end), vy(end,:)], [5, fref], 1e-1);
%!test %# five output arguments and no Events
%! [vt, vy, vxe, vye, vie] = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0]);
%! assert ([vt(end), vy(end,:)], [5, fref], 1e-1);
%! assert ([vie, vxe, vye], []);
%!test %# anonymous function instead of real function
%! faym = @(vt, vy, vz) [exp(-vt) - vz(1); vy(1) - vz(2)];
%! vsol = ode54d (faym, [0 5], [1; 0], 1, [1; 0]);
%! assert ([vsol.x(end), vsol.y(end,:)], [5, fref], 1e-1);
%!test %# extra input arguments passed trhough
%! vsol = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0], 'KL');
%! assert ([vsol.x(end), vsol.y(end,:)], [5, fref], 1e-1);
%!test %# empty OdePkg structure *but* extra input arguments
%! vopt = odeset;
%! vsol = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0], vopt, 12, 13, 'KL');
%! assert ([vsol.x(end), vsol.y(end,:)], [5, fref], 1e-1);
%!error %# strange OdePkg structure
%! vopt = struct ('foo', 1);
%! vsol = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0], vopt);
%!test %# AbsTol option
%! vopt = odeset ('AbsTol', 1e-5);
%! vsol = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0], vopt);
%! assert ([vsol.x(end), vsol.y(end,:)], [5, fref], 1e-1);
%!test %# AbsTol and RelTol option
%! vopt = odeset ('AbsTol', 1e-7, 'RelTol', 1e-7);
%! vsol = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0], vopt);
%! assert ([vsol.x(end), vsol.y(end,:)], [5, fref], 1e-1);
%!test %# RelTol and NormControl option
%! vopt = odeset ('AbsTol', 1e-7, 'NormControl', 'on');
%! vsol = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0], vopt);
%! assert ([vsol.x(end), vsol.y(end,:)], [5, fref], .5e-1);
%!test %# NonNegative for second component
%! vopt = odeset ('NonNegative', 1);
%! vsol = ode54d (@fexp, [0 2.5], [1; 0], 1, [1; 0], vopt);
%! assert ([vsol.x(end), vsol.y(end,:)], [2.5, 0.001, 0.237], 1e-1);
%!test %# Details of OutputSel and Refine can't be tested
%! vopt = odeset ('OutputFcn', @fout, 'OutputSel', 1, 'Refine', 5);
%! vsol = ode54d (@fexp, [0 2.5], [1; 0], 1, [1; 0], vopt);
%!test %# Stats must add further elements in vsol
%! vopt = odeset ('Stats', 'on');
%! vsol = ode54d (@fexp, [0 2.5], [1; 0], 1, [1; 0], vopt);
%! assert (isfield (vsol, 'stats'));
%! assert (isfield (vsol.stats, 'nsteps'));
%!test %# InitialStep option
%! vopt = odeset ('InitialStep', 1e-8);
%! vsol = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0], vopt);
%! assert ([vsol.x(end), vsol.y(end,:)], [5, fref], 1e-1);
%!test %# MaxStep option
%! vopt = odeset ('MaxStep', 1e-2);
%! vsol = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0], vopt);
%! assert ([vsol.x(end), vsol.y(end,:)], [5, fref], 1e-1);
%!test %# Events option add further elements in vsol
%! vopt = odeset ('Events', @feve);
%! vsol = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0], vopt);
%! assert (isfield (vsol, 'ie'));
%! assert (vsol.ie, [1; 1]);
%! assert (isfield (vsol, 'xe'));
%! assert (isfield (vsol, 'ye'));
%!test %# Events option, now stop integration
%! warning ('off', 'OdePkg:HideWarning');
%! vopt = odeset ('Events', @fevn, 'NormControl', 'on');
%! vsol = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0], vopt);
%! assert ([vsol.ie, vsol.xe, vsol.ye], ...
%! [1.0000, 2.9219, -0.2127, -0.2671], 1e-1);
%!test %# Events option, five output arguments
%! vopt = odeset ('Events', @fevn, 'NormControl', 'on');
%! [vt, vy, vxe, vye, vie] = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0], vopt);
%! assert ([vie, vxe, vye], ...
%! [1.0000, 2.9219, -0.2127, -0.2671], 1e-1);
%!
%! %# test for Jacobian option is missing
%! %# test for Jacobian (being a sparse matrix) is missing
%! %# test for JPattern option is missing
%! %# test for Vectorized option is missing
%! %# test for NewtonTol option is missing
%! %# test for MaxNewtonIterations option is missing
%!
%!test %# Mass option as function
%! vopt = odeset ('Mass', eye (2,2));
%! vsol = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0], vopt);
%! assert ([vsol.x(end), vsol.y(end,:)], [5, fref], 1e-1);
%!test %# Mass option as matrix
%! vopt = odeset ('Mass', eye (2,2));
%! vsol = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0], vopt);
%! assert ([vsol.x(end), vsol.y(end,:)], [5, fref], 1e-1);
%!test %# Mass option as sparse matrix
%! vopt = odeset ('Mass', sparse (eye (2,2)));
%! vsol = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0], vopt);
%! assert ([vsol.x(end), vsol.y(end,:)], [5, fref], 1e-1);
%!test %# Mass option as function and sparse matrix
%! vopt = odeset ('Mass', @fmsa);
%! vsol = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0], vopt);
%! assert ([vsol.x(end), vsol.y(end,:)], [5, fref], 1e-1);
%!test %# Mass option as function and MStateDependence
%! vopt = odeset ('Mass', @fmas, 'MStateDependence', 'strong');
%! vsol = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0], vopt);
%! assert ([vsol.x(end), vsol.y(end,:)], [5, fref], 1e-1);
%!test %# Set BDF option to something else than default
%! vopt = odeset ('BDF', 'on');
%! [vt, vy] = ode54d (@fexp, [0 5], [1; 0], 1, [1; 0], vopt);
%! assert ([vt(end), vy(end,:)], [5, fref], 0.5);
%!
%! %# test for MvPattern option is missing
%! %# test for InitialSlope option is missing
%! %# test for MaxOrder option is missing
%!
%! warning ('on', 'OdePkg:InvalidOption');
%# Local Variables: ***
%# mode: octave ***
%# End: ***
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