/usr/include/ncbi/layout.h is in libvibrant6-dev 6.1.20120620-7.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 | #ifndef _LAYOUT_
#define _LAYOUT_
#include <jzcoll.h>
/*#####################################################################
#
# functions related to the layout for FeatNode
#
######################################################################*/
/**********************************************************************
*
* LayoutNodeFlat(head, maxScale, top, seq_pos, downward, label_pos)
* layout the FeatNode as a stacked layout
* head: the list of FeatNode. Will be resorted
* maxScale: the maximum scale in the picture
* top: current available position at y-axis
* seq_pos: store the position for drawing the sequence after the
* stacking is over
* downward: stack the genes below the sequence line
* label_pos: if(TRUE), label the map position for each cluster
*
**********************************************************************/
Int4 LayoutNodeFlat PROTO((ValNodePtr PNTR head, Int4 maxScale, Int4 top, Uint1 label_type, Boolean supress));
Int4 LayoutAlignFlat PROTO((ValNodePtr head, Int4 maxScale, Int4 top));
/***********************************************************************
*
* Int4 LayoutFeatNode(head, top, next_sp, space, maxScale, check_interval)
* Layout the fnp->line, inp->line according to Maximun packing, return
* the next availabel space for drawing
* head: the FeatNode. will be sorted
* top: the current y position
* next_sp: min. space for separating two neibouring objects
* space: the vertical space consumed by each line
* maxScale: max scale for the picture
* check_interval: layout each interval?
*
*
************************************************************************/
Int4 LayoutFeatNode PROTO((ValNodePtr head, Int4 top, Int4 maxScale, Int4 next_sp, Boolean show_label, Boolean compress));
void ReSetFeatNode PROTO((ValNodePtr fnp_node));
ValNodePtr GroupFeatNode PROTO((ValNodePtr PNTR head));
ValNodePtr OrderCdsmRNA PROTO((ValNodePtr PNTR head));
ValNodePtr strip_repeat_feature PROTO((ValNodePtr PNTR f_node));
/**********************************************************************
*
* LayoutAlignNode(head, top, maxScale)
* head: the list of AlignNode
* top: the current y position
* maxScale: the maximum scale
* the labels on the features of a sequence is not counted in the layout
*
***********************************************************************/
Int4 LayoutAlignNode PROTO((ValNodePtr head, Int4 top, Int4 maxScale, Int4 height));
void SortSameSeqInAlignNode PROTO((ValNodePtr anp_list));
void modify_insert_fnode PROTO((ValNodePtr fnode, Int4 offset));
Int2 get_current_class PROTO((FeatNodePtr fnp));
#endif
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