/usr/include/rdkit/Query/Query.h is in librdkit-dev 201309-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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// Copyright (c) 2003-2006 Greg Landrum and Rational Discovery LLC
//
// @@ All Rights Reserved @@
// This file is part of the RDKit.
// The contents are covered by the terms of the BSD license
// which is included in the file license.txt, found at the root
// of the RDKit source tree.
//
#ifndef __RD_QUERY_H__
#define __RD_QUERY_H__
#ifdef _MSC_VER
#pragma warning (disable: 4800) // warning: converting things to bool
#endif
#include <vector>
#include <string>
#include <boost/smart_ptr.hpp>
#include <RDGeneral/Invariant.h>
namespace Queries {
//! class to allow integer values to pick templates
template <int v>
class Int2Type
{
enum { value = v };
};
//! Base class for all queries
/*!
Query objects have one or two functions associated with them:
- <tt>bool matchFunc(MatchFuncArgType other)</tt> returns true or false
to indicate whether this query matches \c other.
This is mandatory.
- <tt>MatchFuncArgType dataFunc(DataFuncArgType other)</tt> converts
the argument \c other from \c DataFuncArgType to \c MatchFuncArgType.
This is optional if \c DataFuncArgType is the same as (or implicitly
convertible to) \c MatchFuncArgType.
*/
template <class MatchFuncArgType, class DataFuncArgType=MatchFuncArgType,
bool needsConversion=false>
class Query {
public:
typedef boost::shared_ptr< Query<MatchFuncArgType, DataFuncArgType, needsConversion> > CHILD_TYPE;
typedef std::vector< CHILD_TYPE > CHILD_VECT;
typedef typename CHILD_VECT::iterator CHILD_VECT_I;
typedef typename CHILD_VECT::const_iterator CHILD_VECT_CI;
Query() : d_description(""),df_negate(false),d_matchFunc(NULL),d_dataFunc(NULL){};
virtual ~Query() { this->d_children.clear(); };
//! sets whether or not we are negated
void setNegation(bool what) { this->df_negate = what; };
//! returns whether or not we are negated
bool getNegation() const { return this->df_negate; };
//! sets our text description
void setDescription(std::string &descr) { this->d_description = descr; };
//! \overload
void setDescription(const char *descr) { this->d_description = std::string(descr); };
//! returns our text description
std::string getDescription() const { return this->d_description; };
//! sets our match function
void setMatchFunc(bool (*what)(MatchFuncArgType)) { this->d_matchFunc = what; };
//! returns our match function:
bool (*getMatchFunc() const)(MatchFuncArgType) { return this->d_matchFunc; };
//! sets our data function
void setDataFunc(MatchFuncArgType (*what)(DataFuncArgType)) { this->d_dataFunc = what; };
//! returns our data function:
MatchFuncArgType (*getDataFunc() const)(DataFuncArgType) { return this->d_dataFunc; };
//! adds a child to our list of children
void addChild(CHILD_TYPE child) { this->d_children.push_back(child); };
//! returns an iterator for the beginning of our child vector
CHILD_VECT_CI beginChildren() const { return this->d_children.begin(); }
//! returns an iterator for the end of our child vector
CHILD_VECT_CI endChildren() const { return this->d_children.end(); }
//! returns whether or not we match the argument
virtual bool Match(const DataFuncArgType arg) const{
MatchFuncArgType mfArg = TypeConvert(arg,Int2Type<needsConversion>());
bool tRes;
if(this->d_matchFunc) tRes = this->d_matchFunc(mfArg);
else tRes = static_cast<bool>(mfArg);
if( this->getNegation() ) return !tRes;
else return tRes;
};
//! returns a copy of this Query
/*!
<b>Notes:</b>
- the caller is responsible for <tt>delete</tt>ing the result
*/
virtual Query<MatchFuncArgType,DataFuncArgType,needsConversion> *
copy( ) const {
Query<MatchFuncArgType,DataFuncArgType,needsConversion> *res =
new Query<MatchFuncArgType,DataFuncArgType,needsConversion>();
typename Query<MatchFuncArgType,DataFuncArgType,needsConversion>::CHILD_VECT_CI iter;
for(iter=this->beginChildren();
iter!=this->endChildren();
++iter){
res->addChild(CHILD_TYPE(iter->get()->copy()));
}
res->df_negate = this->df_negate;
res->d_matchFunc = this->d_matchFunc;
res->d_dataFunc = this->d_dataFunc;
res->d_description = this->d_description;
return res;
};
protected :
std::string d_description;
CHILD_VECT d_children;
bool df_negate;
bool (*d_matchFunc) (MatchFuncArgType);
MatchFuncArgType (*d_dataFunc)(DataFuncArgType);
//! \brief calls our \c dataFunc (if it's set) on \c what and returns
//! the result, otherwise returns \c what
MatchFuncArgType TypeConvert(MatchFuncArgType what,Int2Type<false> /*d*/) const{
MatchFuncArgType mfArg;
if( this->d_dataFunc != NULL ){
mfArg = this->d_dataFunc(what);
} else {
mfArg = what;
}
return mfArg;
}
//! calls our \c dataFunc (which must be set) on \c what and returns the result
MatchFuncArgType TypeConvert(DataFuncArgType what,Int2Type<true> /*d*/) const{
PRECONDITION(this->d_dataFunc,"no data function");
MatchFuncArgType mfArg;
mfArg = this->d_dataFunc(what);
return mfArg;
}
};
//----------------------------
//
// Used within query functions to compare values
//
//----------------------------
template <class T1, class T2>
int queryCmp(const T1 v1, const T2 v2, const T1 tol) {
T1 diff = v1 - v2;
if( diff <= tol ){
if( diff >= -tol ){
return 0;
} else {
return -1;
}
} else {
return 1;
}
};
}
#endif
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