This file is indexed.

/usr/include/openturns/FittingTest.hxx is in libopenturns-dev 1.2-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
//                                               -*- C++ -*-
/**
 *  @file  FittingTest.hxx
 *  @brief StatTest implements statistical tests
 *
 *  Copyright (C) 2005-2013 EDF-EADS-Phimeca
 *
 *  This library is free software: you can redistribute it and/or modify
 *  it under the terms of the GNU Lesser General Public License as published by
 *  the Free Software Foundation, either version 3 of the License, or
 *  (at your option) any later version.
 *
 *  This library is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU Lesser General Public License for more details.
 *
 *  You should have received a copy of the GNU Lesser General Public
 *  along with this library.  If not, see <http://www.gnu.org/licenses/>.
 *
 *  @author schueller
 *  @date   2012-07-16 10:12:54 +0200 (Mon, 16 Jul 2012)
 */
#ifndef OPENTURNS_FITTINGTEST_HXX
#define OPENTURNS_FITTINGTEST_HXX

#include "OTprivate.hxx"
#include "TestResult.hxx"
#include "Collection.hxx"
#include "NumericalSample.hxx"
#include "Distribution.hxx"
#include "DistributionFactory.hxx"
#include "Pointer.hxx"

BEGIN_NAMESPACE_OPENTURNS

/**
 * @class FittingTest
 *
 */

class FittingTest
{
public:

  typedef Collection<DistributionFactory> DistributionFactoryCollection;
  typedef Collection<Distribution>        DistributionCollection;

  /** Best model for a given numerical sample by BIC */
  static Distribution BestModelBIC(const NumericalSample  & sample,
                                   const DistributionFactoryCollection & factoryCollection);

  /** Best model for a given numerical sample by BIC */
  static Distribution BestModelBIC(const NumericalSample  & sample,
                                   const DistributionCollection & distributionCollection);


  /** Best model for a given numerical sample by Kolmogorov */
  static Distribution BestModelKolmogorov(const NumericalSample  & sample,
                                          const DistributionFactoryCollection & factoryCollection);

  /** Best model for a given numerical sample by Kolmogorov */
  static Distribution BestModelKolmogorov(const NumericalSample  & sample,
                                          const DistributionCollection & distributionCollection);


  /** Best model for a given numerical sample by ChiSquared */
  static Distribution BestModelChiSquared(const NumericalSample  & sample,
                                          const DistributionFactoryCollection & factoryCollection);

  /** Best model for a given numerical sample by ChiSquared */
  static Distribution BestModelChiSquared(const NumericalSample  & sample,
                                          const DistributionCollection & distributionCollection);


  /** Bayesian Information Criterion computation */
  static NumericalScalar BIC(const NumericalSample & sample,
                             const Distribution & distribution,
                             const UnsignedLong estimatedParameters = 0);

  /** Bayesian Information Criterion computation */
  static NumericalScalar BIC(const NumericalSample & sample,
                             const DistributionFactory & factory);

  /** Kolmogorov fitting test for continuous distributions */
  static TestResult Kolmogorov(const NumericalSample & sample,
                               const Distribution & distribution,
                               const NumericalScalar level = 0.95,
                               const UnsignedLong estimatedParameters = 0);

  /** Kolmogorov fitting test for continuous distributions */
  static TestResult Kolmogorov(const NumericalSample & sample,
                               const DistributionFactory & factory,
                               const NumericalScalar level = 0.95);

  /** ChiSquared fitting test for discrete distributions */
  static TestResult ChiSquared(const NumericalSample & sample,
                               const Distribution & distribution,
                               const NumericalScalar level = 0.95,
                               const UnsignedLong estimatedParameters = 0);

  /** ChiSquared fitting test for discrete distributions */
  static TestResult ChiSquared(const NumericalSample & sample,
                               const DistributionFactory & factory,
                               const NumericalScalar level = 0.95);

  /** Get last fitting measure */
  static TestResult GetLastResult();

protected:
  /** Generic invocation of a R script for testing a distribution against a sample */
  static TestResult RunRTest(const NumericalSample & sample,
                             const Distribution & distribution,
                             const NumericalScalar level,
                             const UnsignedLong estimatedParameters,
                             const String & testName);

private:
  /** Stores last measure of test */
  static TestResult lastResult_;

  FittingTest();

}; /* class FittingTest */

END_NAMESPACE_OPENTURNS
#endif /* OPENTURNS_FITTINGTEST_HXX */