This file is indexed.

/usr/include/ncbi/ncbiopt.h is in libncbi6-dev 6.1.20120620-7.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
#ifndef _NCBIOPT_
#define _NCBIOPT_

/*  $Id: ncbiopt.h,v 6.16 2005/11/16 16:36:11 kans Exp $
* ==========================================================================
*
*                            PUBLIC DOMAIN NOTICE
*               National Center for Biotechnology Information
*
*  This software/database is a "United States Government Work" under the
*  terms of the United States Copyright Act.  It was written as part of
*  the author's official duties as a United States Government employee and
*  thus cannot be copyrighted.  This software/database is freely available
*  to the public for use. The National Library of Medicine and the U.S.
*  Government have not placed any restriction on its use or reproduction.
*
*  Although all reasonable efforts have been taken to ensure the accuracy
*  and reliability of the software and data, the NLM and the U.S.
*  Government do not and cannot warrant the performance or results that
*  may be obtained by using this software or data. The NLM and the U.S.
*  Government disclaim all warranties, express or implied, including
*  warranties of performance, merchantability or fitness for any particular
*  purpose.
*
*  Please cite the author in any work or product based on this material.
*
* ==========================================================================
*
* Authors:  Denis Vakatov, Hugues Sicotte
*
* File Description:
*  Miscellaneous platform-dependent types etc. that are probably not
*  available or not exactly in-sync for different platforms
*
* --------------------------------------------------------------------------
* $Log: ncbiopt.h,v $
* Revision 6.16  2005/11/16 16:36:11  kans
* support for PowerPC and Intel chips for Macintosh
*
* Revision 6.15  2004/07/15 15:11:45  ucko
* Disable workaround for Linux distributions (RH7?) that misdefine LONG_BIT.
*
* Revision 6.14  2004/03/25 17:10:57  lebedev
* Include stdint.h for Darwin, so undef will work for UINT8_MAX
*
* Revision 6.13  2004/03/11 18:53:48  rsmith
* turn on long long support on UNIX_DARWIN (Mac)
*
* Revision 6.12  2003/05/05 11:55:22  rsmith
* Codewarrior compiling for Win32 already has definitions for INT8 min and max.
*
* Revision 6.11  2002/12/18 22:11:27  kans
* a couple more C++ comments slipped by, changed to C style
*
* Revision 6.10  2002/12/17 23:00:48  kans
* support for OS_UNIX_DARWIN for Mach-O executables (RGS)
*
* Revision 6.9  2001/08/09 19:21:29  juran
* Wrap the inclusion of <stdint.h> in #ifdef __MWERKS__.
*
* Revision 6.8  2001/08/09 18:55:28  juran
* Include <stdint.h> to avoid macro redefinition errors.
*
* Revision 6.7  2001/03/15 21:23:12  vakatov
* [OS_UNIX_AIX] #define Int8 long long  (was just "long").
* Fix by the Ruth Isserlin & Christopher Hogue, chogue@mdsproteomics.com
*
* Revision 6.6  2001/03/14 21:11:27  vakatov
* Int8 is "long long" for OS_UNIX::PROC_HPPA (M.Dumontier, micheld@mshri.on.ca)
*
* Revision 6.5  2000/12/21 15:52:22  vakatov
* [__GNUC__, OS_LINUX]  Force Int8 be "long long"
*
* Revision 6.4  2000/12/20 19:02:49  vakatov
* [__GNUC__]  Use "long long", do not rely on LONG_BIT (RedHat Linux 7.0)
*
* Revision 6.3  2000/03/20 16:04:38  vakatov
* [__GNUC__]  Fixed for absent #LONG_LONG_***
*
* Revision 6.2  1999/08/25 18:21:36  vakatov
* Int8 for OS_UNIX_AIX
*
* Revision 6.1  1998/08/11 22:09:08  vakatov
* Initial revision
*
* ==========================================================================
*/


/********************************************************
 *
 *  Int8, Uint8, INT8_MIN, INT8_MAX, UINT8_MAX
 *
 *  NOTE:  define it as Int4 for the platforms with no 8-byte integers
 *
 *  TESTED WITH:
 *    SunOS peony 5.6 Generic_105181-04 sun4u sparc SUNW,Ultra-1
 *      cc: WorkShop Compilers 4.2 30 Oct 1996 C 4.2
 *      CC: WorkShop Compilers 4.2 18 Sep 1997 C++ 4.2 patch 104631-04
 *      gcc, g++: gcc version 2.7.2.3
 *
 *    SunOS oldies 4.1.3_U1 22 sun4m
 *      CC: SC3.0.1 07 Jul 1995
 *      gcc, g++: gcc version 2.7.2.3
 *
 *    IRIX64 muncher 6.4 02121744 IP27
 *      cc: ???
 *
 *    IRIX leo 5.3 08031226 IP22 mips
 *      cc: ???
 *
 *    OSF1 annie V4.0 564 alpha
 *      gcc, g++: gcc version 2.8.0
 *      cc: ???
 *
 *    16-bit MS-Windows applications built with:
 *      Visual C++ 1.52 (Int8 is not supported, so gets substituted by Int4)
 *
 *    32-bit MS-Windows applications built with:
 *      Visual  C++ 4.2
 *      Visual  C++ 5.0
 *      Borland C++ 4.5 (Int8 is not supported, so gets substituted by Int4)
 */

/*
Avoid errors when stdint.h tries to 'redefine' standard macros that we've corrupted,
by including it first.
*/
#if defined(__MWERKS__) || defined(OS_UNIX_DARWIN)
#include <stdint.h>
#endif

#if !defined(Int8) || !defined(Uint8) || !defined(Int8Ptr) || !defined(Uint8Ptr)

#  if defined(Int8) || defined(Uint8) || defined(Int8Ptr) || defined(Uint8Ptr)
     /* aut Caesar aut nihil... */
     ;;;!!!PARTIALLY DEFINED 8-BYTE INTEGER TYPES!!!;;;
#  endif

   /* on 64-bit operating systems, the long data type is already 8 bytes */
#  if LONG_BIT==64 /* &&  !defined(OS_UNIX_LINUX) */
#    define Int8  long
#    define Uint8 unsigned long

   /* GNU compiler defines "long long" data type */
#  elif defined(__GNUC__)
#    define Int8  long long
#    define Uint8 unsigned long long

   /* use the compiler-dependent internal data types */
#  elif defined(OS_NT)  &&  _INTEGRAL_MAX_BITS >= 64
#      define Int8  __int64
#      define Uint8 unsigned __int64

#  elif defined(OS_UNIX)
     /* (signed) */
#    if defined(OS_UNIX_LINUX) || defined(OS_UNIX_SOL) || \
    defined(OS_UNIX_IRIX) || defined(PROC_HPPA) || defined(OS_UNIX_AIX) || defined(OS_UNIX_DARWIN)
#      define Int8 long long
#    elif defined(PROC_ALPHA)
#      define Int8 long
#    endif

     /* (unsigned) */
#    if defined(Int8) 
#      define Uint8 unsigned Int8
#    endif

#  elif defined(OS_MAC) 
#    if defined(PROC_PPC)
#      define Int8  long long
#      define Uint8 unsigned long long
#    elif defined(PROC_I80X86)
#      define Int8  long long
#      define Uint8 unsigned long long
#    elif defined(PROC_MC680X0)
#      define Int8  long long
#      define Uint8 unsigned long long
#    endif

#  elif defined(PROC_ALPHA) 
#    define Uint8 unsigned long
#    define Int8  long

#  endif  /* #definitions of Int8,Uint8 for known platforms and compilers */



/* Have to undefine Int8 limits if already defined, as on some platforms
 * INT8_MAX, etc. exist but refer to 8-bit(not 8-byte!) integers
 RGS no need to worry about partially Defined stuff if we do them individually
*/
#	if defined(INT8_MIN)
#		undef INT8_MIN
#	endif
#	if defined(INT8_MAX)
#		undef INT8_MAX
#	endif
#	if defined(UINT8_MAX)
#		undef UINT8_MAX
#	endif
 
#  if  defined(Int8)  ||  defined(Uint8)

#    if !defined(Int8)  ||  !defined(Uint8)
       ;;;!!!PARTIALLY DEFINED 8-BYTE INTEGER TYPES!!!;;;
#    endif

     typedef Int8   Nlm_Int8;
     typedef Int8*  Nlm_Int8Ptr;
     typedef Uint8  Nlm_Uint8;
     typedef Uint8* Nlm_Uint8Ptr;


/*	RGS 
#    if defined(INT8_MIN) || defined(INT8_MAX) || defined(UINT8_MAX)
#      if !defined(INT8_MIN) || !defined(INT8_MAX) || !defined(UINT8_MAX)
         ;;;!!!PARTIALLY DEFINED 8-BYTE INTEGER LIMITS!!!;;;
#      endif
#      undef INT8_MIN
#      undef INT8_MAX
#      undef UINT8_MAX
#    endif
*/

#    if LONG_BIT==64
#      define INT8_MIN  LONG_MIN
#      define INT8_MAX  LONG_MAX
#      define UINT8_MAX ULONG_MAX

#    elif defined(__GNUC__)  &&  defined(LONG_LONG_MIN)
#      define INT8_MIN  LONG_LONG_MIN
#      define INT8_MAX  LONG_LONG_MAX
#      define UINT8_MAX ULONG_LONG_MAX

#    elif defined(OS_NT) && ! defined(COMP_METRO)
#        define INT8_MIN  _I64_MIN
#        define INT8_MAX  _I64_MAX
#        define UINT8_MAX _UI64_MAX
#    else /* def GNUC, LONG_BIT==64 */
#      ifdef LLONG_MIN
#        define INT8_MIN LLONG_MIN
#      else
#        define INT8_MIN (-9223372036854775807LL-1LL)
#      endif

#      ifdef LLONG_MAX
#        define INT8_MAX LLONG_MAX
#      else
#        define INT8_MAX 9223372036854775807LL
#      endif

#      ifdef ULLONG_MAX
#        define UINT8_MAX ULLONG_MAX
#      else
#        define UINT8_MAX 18446744073709551615ULL
#      endif
#    endif /* else def GNUC, LONG_BIT==64 */

     /* will be (re)defined after this #if */
#    undef  Int8
#    undef  Uint8

#  else
     /* Until we migrate to C++, and we can overload operations and
      * specify type conversions, we cannot simply define the Int8 datatype
      * as a structure...
      * Type the Int8 as Int4 so we can compile the tools.
      */
#    define Nlm_Int8     Nlm_Int4
#    define Nlm_Int8Ptr  Nlm_Int4Ptr
#    define Nlm_Uint8    Nlm_Uint4
#    define Nlm_Uint8Ptr Nlm_Uint4Ptr

#    define INT8_MIN  INT4_MIN
#    define INT8_MAX  INT4_MAX
#    define UINT8_MAX UINT4_MAX

#  endif /* else def Int8,Uint8 */


/* The final type definitions
 */
#  define Int8     Nlm_Int8
#  define Uint8    Nlm_Uint8
#  define Int8Ptr  Nlm_Int8Ptr
#  define Uint8Ptr Nlm_Uint8Ptr

#endif /* ndef Int8, ndef Uint8, ndef Int8Ptr, ndef Uint8Ptr */


#endif  /* _NCBIOPT_ */