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/usr/include/InsightToolkit/Utilities/metaIOConfig.h is in libinsighttoolkit3-dev 3.20.1+git20120521-5.

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//
// To install MetaIO in ITK, this file should be copied into the directory
//   /ITK/Utilities and renamed to metaIOConfig.h
//
// This file is automatically included by 
//   MetaIO/localMetaConfiguration.h
//
// This file is needed to configure the local MetaIO files at compile time.
// Local MetaIO configuration changes include enabling/disabling the use
// of a MetaIO namespace, format of stl and cout calls, etc.   These 
// configuration changes differentiate ITK's MetaIO distribution from
// VTK's MetaIO distribution and allow them to share the same code base,
// i.e., the same MetaIO cvs repository is linked into both projects' cvs 
// repository. The common MetaIO cvs tree is located in KWPublic/MetaIO/src.
//

#undef METAIO_FOR_VTK

#define METAIO_FOR_ITK 1