This file is indexed.

/usr/include/freefoam/OpenFOAM/lduMatrix.H is in libfreefoam-dev 0.1.0+dfsg-1build1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
/*---------------------------------------------------------------------------*\
  =========                 |
  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
   \\    /   O peration     |
    \\  /    A nd           | Copyright (C) 1991-2010 OpenCFD Ltd.
     \\/     M anipulation  |
-------------------------------------------------------------------------------
License
    This file is part of OpenFOAM.

    OpenFOAM is free software: you can redistribute it and/or modify it
    under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
    for more details.

    You should have received a copy of the GNU General Public License
    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.

Class
    Foam::lduMatrix

Description
    lduMatrix is a general matrix class in which the coefficients are
    stored as three arrays, one for the upper triangle, one for the
    lower triangle and a third for the diagonal.

    Addressing arrays must be supplied for the upper and lower triangles.

    It might be better if this class were organised as a hierachy starting
    from an empty matrix, then deriving diagonal, symmetric and asymmetric
    matrices.

SourceFiles
    lduMatrixATmul.C
    lduMatrix.C
    lduMatrixTemplates.C
    lduMatrixOperations.C
    lduMatrixSolver.C
    lduMatrixPreconditioner.C
    lduMatrixTests.C
    lduMatrixUpdateMatrixInterfaces.C

\*---------------------------------------------------------------------------*/

#ifndef lduMatrix_H
#define lduMatrix_H

#include <OpenFOAM/lduMesh.H>
#include <OpenFOAM/primitiveFieldsFwd.H>
#include <OpenFOAM/FieldField.H>
#include <OpenFOAM/lduInterfaceFieldPtrsList.H>
#include <OpenFOAM/typeInfo.H>
#include <OpenFOAM/autoPtr.H>
#include <OpenFOAM/runTimeSelectionTables.H>

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

namespace Foam
{

// Forward declaration of friend functions and operators

class lduMatrix;
Ostream& operator<<(Ostream&, const lduMatrix&);


/*---------------------------------------------------------------------------*\
                           Class lduMatrix Declaration
\*---------------------------------------------------------------------------*/

class lduMatrix
{
    // private data

        //- LDU mesh reference
        const lduMesh& lduMesh_;

        //- Coefficients (not including interfaces)
        scalarField *lowerPtr_, *diagPtr_, *upperPtr_;


public:

    //- Class returned by the solver, containing performance statistics
    class solverPerformance
    {
        word   solverName_;
        word   fieldName_;
        scalar initialResidual_;
        scalar finalResidual_;
        label  noIterations_;
        bool   converged_;
        bool   singular_;


    public:

        // Constructors

            solverPerformance()
            :
                initialResidual_(0),
                finalResidual_(0),
                noIterations_(0),
                converged_(false),
                singular_(false)
            {}


            solverPerformance
            (
                const word&  solverName,
                const word&  fieldName,
                const scalar iRes = 0,
                const scalar fRes = 0,
                const label  nIter = 0,
                const bool   converged = false,
                const bool   singular = false
            )
            :
                solverName_(solverName),
                fieldName_(fieldName),
                initialResidual_(iRes),
                finalResidual_(fRes),
                noIterations_(nIter),
                converged_(converged),
                singular_(singular)
            {}


        // Member functions

            //- Return solver name
            const word& solverName() const
            {
                return solverName_;
            }

            //- Return initial residual
            scalar initialResidual() const
            {
                return initialResidual_;
            }

            //- Return initial residual
            scalar& initialResidual()
            {
                return initialResidual_;
            }


            //- Return final residual
            scalar finalResidual() const
            {
                return finalResidual_;
            }

            //- Return final residual
            scalar& finalResidual()
            {
                return finalResidual_;
            }


            //- Return number of iterations
            label nIterations() const
            {
                return noIterations_;
            }

            //- Return number of iterations
            label& nIterations()
            {
                return noIterations_;
            }


            //- Has the solver converged?
            bool converged() const
            {
                return converged_;
            }

            //- Is the matrix singular?
            bool singular() const
            {
                return singular_;
            }

            //- Convergence test
            bool checkConvergence
            (
                const scalar tolerance,
                const scalar relTolerance
            );

            //- Singularity test
            bool checkSingularity(const scalar residual);

            //- Print summary of solver performance
            void print() const;
    };


    //- Abstract base-class for lduMatrix solvers
    class solver
    {
    protected:

        // Protected data

            word fieldName_;
            const lduMatrix& matrix_;
            const FieldField<Field, scalar>& interfaceBouCoeffs_;
            const FieldField<Field, scalar>& interfaceIntCoeffs_;
            lduInterfaceFieldPtrsList interfaces_;

            //- dictionary of controls
            dictionary controlDict_;

            //- Maximum number of iterations in the solver
            label maxIter_;

            //- Final convergence tolerance
            scalar tolerance_;

            //- Convergence tolerance relative to the initial
            scalar relTol_;


        // Protected Member Functions

            //- Read the control parameters from the controlDict_
            virtual void readControls();


    public:

        //- Runtime type information
        virtual const word& type() const = 0;


        // Declare run-time constructor selection tables

            declareRunTimeSelectionTable
            (
                autoPtr,
                solver,
                symMatrix,
                (
                    const word& fieldName,
                    const lduMatrix& matrix,
                    const FieldField<Field, scalar>& interfaceBouCoeffs,
                    const FieldField<Field, scalar>& interfaceIntCoeffs,
                    const lduInterfaceFieldPtrsList& interfaces,
                    const dictionary& solverControls
                ),
                (
                    fieldName,
                    matrix,
                    interfaceBouCoeffs,
                    interfaceIntCoeffs,
                    interfaces,
                    solverControls
                )
            );

            declareRunTimeSelectionTable
            (
                autoPtr,
                solver,
                asymMatrix,
                (
                    const word& fieldName,
                    const lduMatrix& matrix,
                    const FieldField<Field, scalar>& interfaceBouCoeffs,
                    const FieldField<Field, scalar>& interfaceIntCoeffs,
                    const lduInterfaceFieldPtrsList& interfaces,
                    const dictionary& solverControls
                ),
                (
                    fieldName,
                    matrix,
                    interfaceBouCoeffs,
                    interfaceIntCoeffs,
                    interfaces,
                    solverControls
                )
            );


        // Constructors

            solver
            (
                const word& fieldName,
                const lduMatrix& matrix,
                const FieldField<Field, scalar>& interfaceBouCoeffs,
                const FieldField<Field, scalar>& interfaceIntCoeffs,
                const lduInterfaceFieldPtrsList& interfaces,
                const dictionary& solverControls
            );

        // Selectors

            //- Return a new solver
            static autoPtr<solver> New
            (
                const word& fieldName,
                const lduMatrix& matrix,
                const FieldField<Field, scalar>& interfaceBouCoeffs,
                const FieldField<Field, scalar>& interfaceIntCoeffs,
                const lduInterfaceFieldPtrsList& interfaces,
                const dictionary& solverControls
            );



        // Destructor

            virtual ~solver()
            {}


        // Member functions

            // Access

                const word& fieldName() const
                {
                    return fieldName_;
                }

                const lduMatrix& matrix() const
                {
                    return matrix_;
                }

                 const FieldField<Field, scalar>& interfaceBouCoeffs() const
                 {
                     return interfaceBouCoeffs_;
                 }

                 const FieldField<Field, scalar>& interfaceIntCoeffs() const
                 {
                     return interfaceIntCoeffs_;
                 }

                 const lduInterfaceFieldPtrsList& interfaces() const
                 {
                     return interfaces_;
                 }


            //- Read and reset the solver parameters from the given stream
            virtual void read(const dictionary&);

            virtual solverPerformance solve
            (
                scalarField& psi,
                const scalarField& source,
                const direction cmpt=0
            ) const = 0;

            //- Return the matrix norm used to normalise the residual for the
            //  stopping criterion
            scalar normFactor
            (
                const scalarField& psi,
                const scalarField& source,
                const scalarField& Apsi,
                scalarField& tmpField
            ) const;
    };


    //- Abstract base-class for lduMatrix smoothers
    class smoother
    {
    protected:

        // Protected data

            word fieldName_;
            const lduMatrix& matrix_;
            const FieldField<Field, scalar>& interfaceBouCoeffs_;
            const FieldField<Field, scalar>& interfaceIntCoeffs_;
            const lduInterfaceFieldPtrsList& interfaces_;


    public:

        //- Find the smoother name (directly or from a sub-dictionary)
        static word getName(const dictionary&);

        //- Runtime type information
        virtual const word& type() const = 0;


        // Declare run-time constructor selection tables

            declareRunTimeSelectionTable
            (
                autoPtr,
                smoother,
                symMatrix,
                (
                    const word& fieldName,
                    const lduMatrix& matrix,
                    const FieldField<Field, scalar>& interfaceBouCoeffs,
                    const FieldField<Field, scalar>& interfaceIntCoeffs,
                    const lduInterfaceFieldPtrsList& interfaces
                ),
                (
                    fieldName,
                    matrix,
                    interfaceBouCoeffs,
                    interfaceIntCoeffs,
                    interfaces
                )
            );

            declareRunTimeSelectionTable
            (
                autoPtr,
                smoother,
                asymMatrix,
                (
                    const word& fieldName,
                    const lduMatrix& matrix,
                    const FieldField<Field, scalar>& interfaceBouCoeffs,
                    const FieldField<Field, scalar>& interfaceIntCoeffs,
                    const lduInterfaceFieldPtrsList& interfaces
                ),
                (
                    fieldName,
                    matrix,
                    interfaceBouCoeffs,
                    interfaceIntCoeffs,
                    interfaces
                )
            );


        // Constructors

            smoother
            (
                const word& fieldName,
                const lduMatrix& matrix,
                const FieldField<Field, scalar>& interfaceBouCoeffs,
                const FieldField<Field, scalar>& interfaceIntCoeffs,
                const lduInterfaceFieldPtrsList& interfaces
            );


        // Selectors

            //- Return a new smoother
            static autoPtr<smoother> New
            (
                const word& fieldName,
                const lduMatrix& matrix,
                const FieldField<Field, scalar>& interfaceBouCoeffs,
                const FieldField<Field, scalar>& interfaceIntCoeffs,
                const lduInterfaceFieldPtrsList& interfaces,
                const dictionary& solverControls
            );


        // Destructor

            virtual ~smoother()
            {}


        // Member functions

            // Access

                const word& fieldName() const
                {
                    return fieldName_;
                }

                const lduMatrix& matrix() const
                {
                    return matrix_;
                }

                 const FieldField<Field, scalar>& interfaceBouCoeffs() const
                 {
                     return interfaceBouCoeffs_;
                 }

                 const FieldField<Field, scalar>& interfaceIntCoeffs() const
                 {
                     return interfaceIntCoeffs_;
                 }

                 const lduInterfaceFieldPtrsList& interfaces() const
                 {
                     return interfaces_;
                 }


            //- Smooth the solution for a given number of sweeps
            virtual void smooth
            (
                scalarField& psi,
                const scalarField& source,
                const direction cmpt,
                const label nSweeps
            ) const = 0;
    };


    //- Abstract base-class for lduMatrix preconditioners
    class preconditioner
    {
    protected:

        // Protected data

            //- Reference to the base-solver this preconditioner is used with
            const solver& solver_;


    public:

        //- Find the preconditioner name (directly or from a sub-dictionary)
        static word getName(const dictionary&);

        //- Runtime type information
        virtual const word& type() const = 0;


        // Declare run-time constructor selection tables

            declareRunTimeSelectionTable
            (
                autoPtr,
                preconditioner,
                symMatrix,
                (
                    const solver& sol,
                    const dictionary& solverControls
                ),
                (sol, solverControls)
            );

            declareRunTimeSelectionTable
            (
                autoPtr,
                preconditioner,
                asymMatrix,
                (
                    const solver& sol,
                    const dictionary& solverControls
                ),
                (sol, solverControls)
            );


        // Constructors

            preconditioner
            (
                const solver& sol
            )
            :
                solver_(sol)
            {}


        // Selectors

            //- Return a new preconditioner
            static autoPtr<preconditioner> New
            (
                const solver& sol,
                const dictionary& solverControls
            );


        // Destructor

            virtual ~preconditioner()
            {}


        // Member functions

            //- Read and reset the preconditioner parameters
            //  from the given stream
            virtual void read(const dictionary&)
            {}

            //- Return wA the preconditioned form of residual rA
            virtual void precondition
            (
                scalarField& wA,
                const scalarField& rA,
                const direction cmpt=0
            ) const = 0;

            //- Return wT the transpose-matrix preconditioned form of
            //  residual rT.
            //  This is only required for preconditioning asymmetric matrices.
            virtual void preconditionT
            (
                scalarField& wT,
                const scalarField& rT,
                const direction cmpt=0
            ) const
            {
                notImplemented
                (
                    type() +"::preconditionT"
                    "(scalarField& wT, const scalarField& rT, "
                    "const direction cmpt)"
                );
            }
    };


    // Static data

        // Declare name of the class and its debug switch
        ClassName("lduMatrix");

        //- Large scalar for the use in solvers
        static const scalar great_;

        //- Small scalar for the use in solvers
        static const scalar small_;


    // Constructors

        //- Construct given an LDU addressed mesh.
        //  The coefficients are initially empty for subsequent setting.
        lduMatrix(const lduMesh&);

        //- Construct as copy
        lduMatrix(const lduMatrix&);

        //- Construct as copy or re-use as specified.
        lduMatrix(lduMatrix&, bool reUse);

        //- Construct given an LDU addressed mesh and an Istream
        //  from which the coefficients are read
        lduMatrix(const lduMesh&, Istream&);


    // Destructor

        ~lduMatrix();


    // Member functions

        // Access to addressing

            //- Return the LDU mesh from which the addressing is obtained
            const lduMesh& mesh() const
            {
                return lduMesh_;
            }

            //- Return the LDU addressing
            const lduAddressing& lduAddr() const
            {
                return lduMesh_.lduAddr();
            }

            //- Return the patch evaluation schedule
            const lduSchedule& patchSchedule() const
            {
                return lduAddr().patchSchedule();
            }


        // Access to coefficients

            scalarField& lower();
            scalarField& diag();
            scalarField& upper();

            const scalarField& lower() const;
            const scalarField& diag() const;
            const scalarField& upper() const;

            bool hasDiag() const
            {
                return (diagPtr_);
            }

            bool hasUpper() const
            {
                return (upperPtr_);
            }

            bool hasLower() const
            {
                return (lowerPtr_);
            }

            bool diagonal() const
            {
                return (diagPtr_ && !lowerPtr_ && !upperPtr_);
            }

            bool symmetric() const
            {
                return (diagPtr_ && (!lowerPtr_ && upperPtr_));
            }

            bool asymmetric() const
            {
                return (diagPtr_ && lowerPtr_ && upperPtr_);
            }


        // operations

            void sumDiag();
            void negSumDiag();

            void sumMagOffDiag(scalarField& sumOff) const;

            //- Matrix multiplication with updated interfaces.
            void Amul
            (
                scalarField&,
                const tmp<scalarField>&,
                const FieldField<Field, scalar>&,
                const lduInterfaceFieldPtrsList&,
                const direction cmpt
            ) const;

            //- Matrix transpose multiplication with updated interfaces.
            void Tmul
            (
                scalarField&,
                const tmp<scalarField>&,
                const FieldField<Field, scalar>&,
                const lduInterfaceFieldPtrsList&,
                const direction cmpt
            ) const;


            //- Sum the coefficients on each row of the matrix
            void sumA
            (
                scalarField&,
                const FieldField<Field, scalar>&,
                const lduInterfaceFieldPtrsList&
            ) const;


            void residual
            (
                scalarField& rA,
                const scalarField& psi,
                const scalarField& source,
                const FieldField<Field, scalar>& interfaceBouCoeffs,
                const lduInterfaceFieldPtrsList& interfaces,
                const direction cmpt
            ) const;

            tmp<scalarField> residual
            (
                const scalarField& psi,
                const scalarField& source,
                const FieldField<Field, scalar>& interfaceBouCoeffs,
                const lduInterfaceFieldPtrsList& interfaces,
                const direction cmpt
            ) const;


            //- Initialise the update of interfaced interfaces
            //  for matrix operations
            void initMatrixInterfaces
            (
                const FieldField<Field, scalar>& interfaceCoeffs,
                const lduInterfaceFieldPtrsList& interfaces,
                const scalarField& psiif,
                scalarField& result,
                const direction cmpt
            ) const;

            //- Update interfaced interfaces for matrix operations
            void updateMatrixInterfaces
            (
                const FieldField<Field, scalar>& interfaceCoeffs,
                const lduInterfaceFieldPtrsList& interfaces,
                const scalarField& psiif,
                scalarField& result,
                const direction cmpt
            ) const;


            template<class Type>
            tmp<Field<Type> > H(const Field<Type>&) const;

            template<class Type>
            tmp<Field<Type> > H(const tmp<Field<Type> >&) const;

            tmp<scalarField> H1() const;

            template<class Type>
            tmp<Field<Type> > faceH(const Field<Type>&) const;

            template<class Type>
            tmp<Field<Type> > faceH(const tmp<Field<Type> >&) const;


    // Member operators

        void operator=(const lduMatrix&);

        void negate();

        void operator+=(const lduMatrix&);
        void operator-=(const lduMatrix&);

        void operator*=(const scalarField&);
        void operator*=(scalar);


    // Ostream operator

        friend Ostream& operator<<(Ostream&, const lduMatrix&);
};


// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

} // End namespace Foam

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

#ifdef NoRepository
#   include <OpenFOAM/lduMatrixTemplates.C>
#endif

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

#endif

// ************************ vim: set sw=4 sts=4 et: ************************ //