This file is indexed.

/usr/include/dune/grid/common/refinement/hcubetriangulation.cc is in libdune-grid-dev 2.2.1-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
// -*- tab-width: 8; indent-tabs-mode: nil; c-basic-offset: 2 -*-
// vi: set et ts=8 sw=2 sts=2:
#ifndef DUNE_GRID_COMMON_REFINEMENT_HCUBETRIANGULATION_CC
#define DUNE_GRID_COMMON_REFINEMENT_HCUBETRIANGULATION_CC

// This file is part of DUNE, a Distributed and Unified Numerics Environment
// This file is copyright (C) 2005 Jorrit Fahlke <jorrit@jorrit.de>
// This file is licensed under version 2 of the GNU General Public License,
// with a special "runtime exception."  See COPYING at the top of the source
// tree for the full licence.

/*! @file

  @brief This file contains the @ref Refinement implementation for
         triangulating hypercubes (quadrilateral -> triangle,
         hexahedron -> tetrahedron)

  See @ref HCubeTriangulation.
  @verbatim
  $Id: hcubetriangulation.cc 8797 2013-02-15 12:27:09Z mblatt $
  @endverbatim
*/

/*! @defgroup HCubeTriangulation Refinement implementation for triangulating hypercubes
    @ingroup Refinement

  Most stuff here is explained in @ref SimplexRefinement.

  We simply triangulate the hypercube into Kuhn simplices, and than
  use the @ref SimplexRefinement to do the refinement.

  We explicitly use some of the utilities from the @ref SimplexRefinement.

*/

#include <dune/common/array.hh>
#include <dune/common/misc.hh>

#include <dune/geometry/genericgeometry/geometry.hh>
#include <dune/geometry/genericgeometry/geometrytraits.hh>
#include <dune/geometry/genericgeometry/topologytypes.hh>
#include <dune/geometry/referenceelements.hh>

#include <dune/grid/common/geometry.hh>

#include "base.cc"
#include "simplex.cc"

namespace Dune {

  namespace RefinementImp {

    /*! @brief This namespace contains the @ref Refinement
               implementation for triangulating hypercubes
               (GeometryType::cube -> GeometryType::simplex)

      See @ref HCubeTriangulation.
    */
    namespace HCubeTriangulation {

      // ////////////
      //
      //  Utilities
      //

      using Simplex::factorial;
      using Simplex::binomial;
      using Simplex::getPermutation;
      using Simplex::referenceToKuhn;
      using Simplex::kuhnToReference;

      // ////////////////////////////////////
      //
      //  Refine a hypercube with simplices
      //

      // forward declaration of the iterator base
      template<int dimension, class CoordType, int codimension>
      class RefinementIteratorSpecial;

      template<int dimension_, class CoordType>
      class RefinementImp
      {
      public:
        enum { dimension = dimension_ };
        // to make Dune::Geometry work:
        struct GridFamily;
        typedef CoordType ctype;
        enum { dimensionworld = dimension };

        template<int codimension>
        struct Codim;
        typedef typename Codim<dimension>::SubEntityIterator VertexIterator;
        typedef FieldVector<CoordType, dimension> CoordVector;
        typedef typename Codim<0>::SubEntityIterator ElementIterator;
        typedef FieldVector<int, dimension+1> IndexVector;

        static int nVertices(int level);
        static VertexIterator vBegin(int level);
        static VertexIterator vEnd(int level);

        static int nElements(int level);
        static ElementIterator eBegin(int level);
        static ElementIterator eEnd(int level);
      private:
        friend class RefinementIteratorSpecial<dimension, CoordType, 0>;
        friend class RefinementIteratorSpecial<dimension, CoordType, dimension>;

        typedef Simplex::RefinementImp<dimension, CoordType> BackendRefinement;
      };

      template<int dimension, class CoordType>
      template<int codimension>
      struct RefinementImp<dimension, CoordType>::Codim
      {
        class SubEntityIterator;
        typedef Dune::Geometry<dimension-codimension, dimension,
                               RefinementImp<dimension, CoordType>,
                               GenericGeometry::Geometry> Geometry;
      };

      template<int dimension, class CoordType>
      int
      RefinementImp<dimension, CoordType>::
      nVertices(int level)
      {
        return BackendRefinement::nVertices(level) * Factorial<dimension>::factorial;
      }

      template<int dimension, class CoordType>
      typename RefinementImp<dimension, CoordType>::VertexIterator
      RefinementImp<dimension, CoordType>::
      vBegin(int level)
      {
        return VertexIterator(level);
      }

      template<int dimension, class CoordType>
      typename RefinementImp<dimension, CoordType>::VertexIterator
      RefinementImp<dimension, CoordType>::
      vEnd(int level)
      {
        return VertexIterator(level, true);
      }

      template<int dimension, class CoordType>
      int
      RefinementImp<dimension, CoordType>::
      nElements(int level)
      {
        return BackendRefinement::nElements(level) * Factorial<dimension>::factorial;
      }

      template<int dimension, class CoordType>
      typename RefinementImp<dimension, CoordType>::ElementIterator
      RefinementImp<dimension, CoordType>::
      eBegin(int level)
      {
        return ElementIterator(level);
      }

      template<int dimension, class CoordType>
      typename RefinementImp<dimension, CoordType>::ElementIterator
      RefinementImp<dimension, CoordType>::
      eEnd(int level)
      {
        return ElementIterator(level, true);
      }

      // //////////////
      //
      // The iterator
      //

      // vertices
      
      template<int dimension, class CoordType>
      class RefinementIteratorSpecial<dimension, CoordType, dimension>
      {
      public:
        typedef RefinementImp<dimension, CoordType> Refinement;
        typedef typename Refinement::CoordVector CoordVector;
        
        RefinementIteratorSpecial(int level, bool end = false);

        void increment();
        
        CoordVector coords() const;
        int index() const;
      protected:
        typedef typename Refinement::BackendRefinement BackendRefinement;
        typedef typename BackendRefinement::template Codim<dimension>::SubEntityIterator BackendIterator;
        enum { nKuhnSimplices = Factorial<dimension>::factorial };
        
        int level;

        int kuhnIndex;
        BackendIterator backend;
        const BackendIterator backendEnd;
      };
    
      template<int dimension, class CoordType>
      RefinementIteratorSpecial<dimension, CoordType, dimension>::
      RefinementIteratorSpecial(int level_, bool end)
        : level(level_), kuhnIndex(0),
          backend(BackendRefinement::vBegin(level)),
          backendEnd(BackendRefinement::vEnd(level))
      {
        if(end)
          kuhnIndex = nKuhnSimplices;
      }
    
      template<int dimension, class CoordType>
      void
      RefinementIteratorSpecial<dimension, CoordType, dimension>::
      increment()
      {
        ++backend;
        if(backend == backendEnd) {
          backend = BackendRefinement::vBegin(level);
          ++kuhnIndex;
        }
      }

      template<int dimension, class CoordType>
      typename RefinementIteratorSpecial<dimension, CoordType, dimension>::CoordVector
      RefinementIteratorSpecial<dimension, CoordType, dimension>::
      coords() const
      {
        return referenceToKuhn(backend.coords(), getPermutation<dimension>(kuhnIndex));
      }

      template<int dimension, class CoordType>
      int
      RefinementIteratorSpecial<dimension, CoordType, dimension>::
      index() const
      { return kuhnIndex*BackendRefinement::nVertices(level) + backend.index(); }

      // elements

      template<int dimension, class CoordType>
      class RefinementIteratorSpecial<dimension, CoordType, 0>
      {
      public:
        typedef RefinementImp<dimension, CoordType> Refinement;
        typedef typename Refinement::IndexVector IndexVector;
        typedef typename Refinement::CoordVector CoordVector;
        typedef typename Refinement::template Codim<0>::Geometry Geometry;
        
        RefinementIteratorSpecial(int level, bool end = false);
        RefinementIteratorSpecial(const RefinementIteratorSpecial<dimension, CoordType, 0> &other);
      
        void increment();
      
        IndexVector vertexIndices() const;
        int index() const;
        CoordVector coords() const;
        Geometry geometry() const;

      protected:
        typedef typename Refinement::BackendRefinement BackendRefinement;
        typedef typename BackendRefinement::template Codim<0>::SubEntityIterator BackendIterator;
        enum { nKuhnSimplices = Factorial<dimension>::factorial };

        int level;
        
        int kuhnIndex;
        BackendIterator backend;
        const BackendIterator backendEnd;
      };
    
      template<int dimension, class CoordType>
      RefinementIteratorSpecial<dimension, CoordType, 0>::
      RefinementIteratorSpecial(int level_, bool end)
        : level(level_), kuhnIndex(0),
          backend(BackendRefinement::eBegin(level)),
          backendEnd(BackendRefinement::eEnd(level))
      {
        if(end)
          kuhnIndex = nKuhnSimplices;
      }
      template<int dimension, class CoordType>
      RefinementIteratorSpecial<dimension, CoordType, 0>::
      RefinementIteratorSpecial(const RefinementIteratorSpecial<dimension, CoordType, 0> &other)
        : level(other.level), kuhnIndex(other.kuhnIndex),
          backend(other.backend),
          backendEnd(other.backendEnd)
      {}
    
      template<int dimension, class CoordType>
      void
      RefinementIteratorSpecial<dimension, CoordType, 0>::
      increment()
      {
        ++backend;
        if(backend == backendEnd) {
          backend = BackendRefinement::eBegin(level);
          ++kuhnIndex;
        }
      }

      template<int dimension, class CoordType>
      typename RefinementIteratorSpecial<dimension, CoordType, 0>::IndexVector
      RefinementIteratorSpecial<dimension, CoordType, 0>::
      vertexIndices() const
      {
        IndexVector indices = backend.vertexIndices();

        int base = kuhnIndex * BackendRefinement::nVertices(level);
        indices += base;

        return indices;
      }

      template<int dimension, class CoordType>
      int
      RefinementIteratorSpecial<dimension, CoordType, 0>::
      index() const
      { return kuhnIndex*BackendRefinement::nElements(level) + backend.index(); }

      template<int dimension, class CoordType>
      typename RefinementIteratorSpecial<dimension, CoordType, 0>::CoordVector
      RefinementIteratorSpecial<dimension, CoordType, 0>::
      coords() const
      {
        return geometry()
          .global(GenericReferenceElements<CoordType, dimension>
                  ::simplex().position(0,0));
      }

      template<int dimension, class CoordType>
      typename RefinementIteratorSpecial<dimension, CoordType, 0>::Geometry
      RefinementIteratorSpecial<dimension, CoordType, 0>::geometry () const
      {
        const typename BackendIterator::Geometry &bgeo = backend.geometry();
        Dune::array<CoordVector, dimension+1> corners;
        for(int i = 0; i <= dimension; ++i)
          corners[i] = referenceToKuhn(bgeo.corner(i),
                                       getPermutation<dimension>(kuhnIndex));

        return Geometry(GenericGeometry::Geometry
                        <dimension, dimension, Refinement>
                        (bgeo.type(), corners));
      }

      // common

      template<int dimension, class CoordType>
      template<int codimension>
      class RefinementImp<dimension, CoordType>::Codim<codimension>::SubEntityIterator
        : public ForwardIteratorFacade<typename RefinementImp<dimension, CoordType>::template Codim<codimension>::SubEntityIterator, int>,
          public RefinementIteratorSpecial<dimension, CoordType, codimension>
      {
      public:
        typedef RefinementImp<dimension, CoordType> Refinement;
        typedef SubEntityIterator This;

        SubEntityIterator(int level, bool end = false);

        bool equals(const This &other) const;
      protected:
        using RefinementIteratorSpecial<dimension, CoordType, codimension>::kuhnIndex;
        using RefinementIteratorSpecial<dimension, CoordType, codimension>::backend;
      };

#ifndef DOXYGEN
      
      template<int dimension, class CoordType>
      template<int codimension>
      RefinementImp<dimension, CoordType>::Codim<codimension>::SubEntityIterator::
      SubEntityIterator(int level, bool end)
        : RefinementIteratorSpecial<dimension, CoordType, codimension>(level, end)
      {}
    
      template<int dimension, class CoordType>
      template<int codimension>
      bool
      RefinementImp<dimension, CoordType>::Codim<codimension>::SubEntityIterator::
      equals(const This &other) const
      { return kuhnIndex == other.kuhnIndex && backend == other.backend; }

#endif // DOXYGEN

    } // namespace HCubeTriangulation

  } // namespace RefinementImp

  namespace GenericGeometry {

    template< int dimension, class CoordType >
    struct GlobalGeometryTraits
    < RefinementImp::HCubeTriangulation::RefinementImp<dimension,
                                                       CoordType> > :
      public DefaultGeometryTraits<CoordType, dimension, dimension>
    {
      //   hybrid   [ true if Codim 0 is hybrid ]
      static const bool hybrid = false;
      //   topologyId [ for Codim 0, needed for (hybrid=false) ]
      static const unsigned topologyId =
        SimplexTopology< dimension >::type::id;
    };

  } // namespace GenericGeometry

  namespace FacadeOptions {

    template<int dimension, class CoordType>
    struct StoreGeometryReference
    < dimension, dimension,
      RefinementImp::HCubeTriangulation::RefinementImp<dimension, CoordType>,
      GenericGeometry::Geometry>
    {
      //! Whether to store by reference or by reference.
      static const bool v = false;
    };

  } // namespace FacadeOptions

  namespace RefinementImp {

    // ///////////////////////
    //
    // The refinement traits
    //

#ifndef DOXYGEN
    template<unsigned topologyId, class CoordType, unsigned coerceToId,
             int dim>
    struct Traits<
      topologyId, CoordType, coerceToId, dim,
      typename enable_if<
        (dim >= 2 &&
         (GenericGeometry::CubeTopology<dim>::type::id >> 1) ==
                    (topologyId >> 1) &&
         (GenericGeometry::SimplexTopology<dim>::type::id >> 1) ==
                    (coerceToId >> 1)
         )>::type
      >
    {
      typedef HCubeTriangulation::RefinementImp<dim, CoordType> Imp;
    };
#endif

  } // namespace RefinementImp

} // namespace Dune

#endif //DUNE_GRID_COMMON_REFINEMENT_HCUBETRIANGULATION_CC