This file is indexed.

/usr/lib/perl5/Ace/Browser/SearchSubs.pm is in libace-perl 1.92-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
package Ace::Browser::SearchSubs;

=head1 NAME

Ace::Browser::SearchSubs - Subroutines for AceBrowser search scripts

=head1 SYNOPSIS

  use Ace;
  use Ace::Browser::AceSubs;
  use Ace::Browser::SearchSubs;
  use CGI qw(:standard);

  my $form = p(start_form,
	       textfield(-name=>'query'),
	       end_form);
  AceSearchTable('Search for stuff',$form);
  ...

  my $query  = param('query');
  my $offset = AceSearchOffset;
  my ($objects,$count) = do_search($query,$offset);
  AceResultsTable($objects,$count,$offset,'Here are results');

=head1 DESCRIPTION

Ace::Browser::SearchSubs exports a set of constants and subroutines
that are useful for creating AceBrowser search scripts.

=head2 CONSTANTS

This package exports the following constants:

  MAXOBJECTS     The maximum number of objects that can be displayed
                 per page.

  SEARCH_ICON    An icon to use for search links. This is deprecated.
                 Use Configuration->Search_icon instead.

=head2 FUNCTIONS

These functions are exported:

=over 4

=cut

# Common constants and subroutines used by the various search scripts

use strict;
use vars qw(@ISA @EXPORT $VERSION);
use Ace::Browser::AceSubs qw(Configuration Url ResolveUrl);
use CGI qw(:standard *table *Tr *td);

require Exporter;
@ISA = qw(Exporter);
$VERSION = '1.30';

######################### This is the list of exported subroutines #######################
@EXPORT = qw(
	     MAXOBJECTS
	     SEARCH_ICON
	     AceSearchTable AceResultsTable AceSearchOffset
	     DisplayInstructions
	    );

# ----- constants used by the pattern search script ------
use constant ROWS           => 10;    # how many rows to allocate for search results
use constant COLS           =>  5;    #  "   "   columns   "       "    "      "
use constant MAXOBJECTS     => ROWS * COLS;  # total objects per screen
use constant ICONS          => '/ico';
use constant SEARCH_ICON    => '/ico/search.gif';
use constant SPACER_ICON    => 'spacer.gif';
use constant LEFT_ICON      => 'cylarrw.gif';
use constant RIGHT_ICON     => 'cyrarrw.gif';

=item $offset = AceSearchOffset()

When the user is paging back and forth among a multi-page list of
results, this function returns the index of the first item to display.

=cut

sub AceSearchOffset {
  my $offset = param('offset') || 0;
  $offset += param('scroll') if param('scroll');
  $offset;
}

=item AceSearchTable([{hash}],$title,@contents)

Given a title and the HTML contents, this formats the search into a
table and gives it the background and foreground colors used elsewhere
for searches.  The formatted search is then printed.

The HTML contents are usually a fill-out form.  For convenience, you
can provide the contents in multiple parts (lines or elements) and
they will be concatenated together.

If the first argument is a hashref, then its contents will be passed
to start_form() to override the form arguments.

=cut

sub AceSearchTable {
  my %attributes = %{shift()} if ref($_[0]) eq 'HASH';
  my ($title,@body) = @_;
  print
    start_form(-action=>url(-absolute=>1,-path_info=>1).'#results',%attributes),
    a({-name=>'search'},''),
    table({-border=>0,-width=>'100%'},
	  TR({-valign=>'MIDDLE'},
	     td({-class=>'searchbody'},@body))),
    end_form;
}

=item AceResultsTable($objects,$count,$offset,$title)

This subroutine formats the results of a search into a pageable list
and prints out the resulting HTML.  The following arguments are required:

 $objects   An array reference containing the objects to place in the
            table.

 $count     The total number of objects.

 $offset    The offset into the array, as returned by AceSearchOffset()

 $title     A title for the table.

The array reference should contain no more than MAXOBJECTS objects.
The AceDB query should be arranged in such a way that this is the
case.  A typical idiom is the following:

  my $offset = AceSearchOffset();
  my $query  = param('query');
  my $count;
  my @objs = $db->fetch(-query=> $query,
			-count  => MAXOBJECTS,
			-offset => $offset,
			-total => \$count
		       );
  AceResultsTable(\@objs,$count,$offset,'Here are the results');

=cut

sub AceResultsTable {
  my ($objects,$count,$offset,$title) = @_;
  Delete('scroll');
  param(-name=>'offset',-value=>$offset);
  my @cheaders = map { $offset + ROWS * $_ } (0..(@$objects-1)/ROWS) if @$objects;
  my @rheaders = (1..min(ROWS,$count));

  $title ||= 'Search Results';

  print 
    a({-name=>'results'},''),
    start_table({-border=>0,-cellspacing=>2,-cellpadding=>2,-width=>'100%',-align=>'CENTER',-class=>'resultsbody'}),
    TR(th({-class=>'resultstitle'},$title));
  unless (@$objects) {
    print end_table,p();
    return;
  }

  print start_Tr,start_td;

  my $need_navbar = $offset > 0 || $count >= MAXOBJECTS;
  my @buttons = make_navigation_bar($offset,$count) if $need_navbar;

  print table({-width=>'50%',-align=>'CENTER'},Tr(@buttons)) if $need_navbar;
  print table({-width=>'100%'},tableize(ROWS,COLS,\@rheaders,\@cheaders,@$objects));

  print end_td,end_Tr,end_table,p();
}

# ------ ugly internal routines for scrolling along the search results list -----
sub make_navigation_bar {
  my($offset,$count) = @_;
  my (@buttons);
  my ($page,$pages) =  (1+int($offset/MAXOBJECTS),1+int($count/MAXOBJECTS));
  my $c = Configuration();
  my $icons  = $c->Icons || '/ico';
  my $spacer = "$icons/". SPACER_ICON;
  my $left   = "$icons/". LEFT_ICON;
  my $right  = "$icons/". RIGHT_ICON;
  my $url    = url(-absolute=>1,-query=>1);
  #  my $url    = self_url();
  push(@buttons,td({-align=>'RIGHT',-valign=>'MIDDLE'},
		   $offset > 0 
		               ? a({-href=>$url
                                  . '&scroll=-' . MAXOBJECTS},
				      img({-src=>$left,-alt=>'< PREVIOUS',-border=>0}))
                               : img({-src=>$spacer,-alt=>''})
		   )
      );

  my $p = 1;
  while ($pages/$p > 25) { $p++; }
  my (@v,%v);
  for (my $i=1;$i<=$pages;$i++) {
    next unless ($i == $page) or (($i-1) % $p == 0);
    my $s = ($i - $page) * MAXOBJECTS;
    push(@v,$s);
    $v{$s}=$i;
  }
  my @hidden;
  Delete('scroll');
  Delete('Go');
  foreach (param()) {
    push(@hidden,hidden(-name=>$_,-value=>[param($_)]));
  }

  push(@buttons,
       td({-valign=>'MIDDLE',-align=>'CENTER'},
	  start_form({-name=>'form1'}),
	  submit(-name=>'Go',-label=>'Go to'),
	  'page',
	  popup_menu(-name=>'scroll',-Values=>\@v,-labels=>\%v,
		     -default=>($page-1)*MAXOBJECTS-$offset,
		     -override=>1,
		     -onChange=>'document.form1.submit()'),
	  "of $pages",
	  @hidden,
	  end_form()
	 )
      );

  push(@buttons,td({-align=>'LEFT',-valign=>'MIDDLE'},
		   $offset + MAXOBJECTS <= $count 
		   ? a({-href=>$url
			    . '&scroll=+' . MAXOBJECTS},
		       img({-src=>$right,-alt=>'NEXT &gt;',-border=>0}))
		   : img({-src=>$spacer,-alt=>''})
		  )
      );
  @buttons;
}

sub min { return $_[0] < $_[1] ? $_[0] : $_[1] }
#line 295

sub tableize {
    my($rows,$columns,$rheaders,$cheaders,@elements) = @_;
    my($result);
    my($row,$column);
    $result .= TR($rheaders ? th('&nbsp;') : (),th({-align=>'LEFT'},$cheaders)) 
      if $cheaders and @$cheaders > 1;
    for ($row=0;$row<$rows;$row++) {
	next unless defined($elements[$row]);
	$result .= "<TR>";
        $result .= qq(<TH  ALIGN=LEFT CLASS="search">$rheaders->[$row]</TH>) if $rheaders;
	for ($column=0;$column<$columns;$column++) {
	    $result .= qq(<TD VALIGN=TOP CLASS="search">) . $elements[$column*$rows + $row] . "</TD>"
		if defined($elements[$column*$rows + $row]);
	}
	$result .= "</TR>";
    }
    return $result;
}

1;

__END__

=back

=head1 BUGS

Please report them.

=head1 SEE ALSO

L<Ace::Object>, L<Ace::Browser::SiteDefs>, L<Ace::Browsr::AceSubs>,
the README.ACEBROWSER file.

=head1 AUTHOR

Lincoln Stein <lstein@cshl.org>.

Copyright (c) 2001 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself.  See DISCLAIMER.txt for
disclaimers of warranty.

=cut