This file is indexed.

/usr/share/gmt/x2sys/xyz.def is in gmt 4.5.11-1build1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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#		$Id: xyz.def 9545 2011-07-27 19:31:54Z pwessel $
#
# Define file for X2SYS processing of ASCII xyz files
#
# This file applies to plain 3-column ASCII files.
#
#---------------------------------------------------------------------
#ASCII		# The input file is ASCII
#SKIP 1		# The number of header records to skip
#---------------------------------------------------------------------
#name	intype	NaN-proxy?	NaN-proxy	scale	offset	oformat
x	a	N		0		1	0	%g
y	a	N		0		1	0	%g
z	a	N		0		1	0	%g