/usr/lib/emboss/include/ensgvsynonym.h is in emboss-lib 6.6.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 | /* @include ensgvsynonym ******************************************************
**
** Ensembl Genetic Variation Synonym functions
**
** @author Copyright (C) 1999 Ensembl Developers
** @author Copyright (C) 2006 Michael K. Schuster
** @version $Revision: 1.8 $
** @modified 2009 by Alan Bleasby for incorporation into EMBOSS core
** @modified $Date: 2012/02/04 10:30:23 $ by $Author: mks $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA 02110-1301, USA.
**
******************************************************************************/
#ifndef ENSGVSYNONYM_H
#define ENSGVSYNONYM_H
/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */
#include "ensgvdata.h"
AJ_BEGIN_DECLS
/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */
/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */
/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */
/*
** Prototype definitions
*/
/* Ensembl Genetic Variation Synonym */
EnsPGvsynonym ensGvsynonymNewCpy(const EnsPGvsynonym gvs);
EnsPGvsynonym ensGvsynonymNewIni(EnsPGvsynonymadaptor gvsa,
ajuint identifier,
EnsPGvsource gvsource,
AjPStr name,
AjPStr moleculetype,
ajuint gvvidentifier,
ajuint subidentifier);
EnsPGvsynonym ensGvsynonymNewRef(EnsPGvsynonym gvs);
void ensGvsynonymDel(EnsPGvsynonym *Pgvs);
EnsPGvsynonymadaptor ensGvsynonymGetAdaptor(const EnsPGvsynonym gvs);
EnsPGvsource ensGvsynonymGetGvsource(const EnsPGvsynonym gvs);
ajuint ensGvsynonymGetGvvariationidentifier(const EnsPGvsynonym gvs);
ajuint ensGvsynonymGetIdentifier(const EnsPGvsynonym gvs);
AjPStr ensGvsynonymGetMoleculetype(const EnsPGvsynonym gvs);
AjPStr ensGvsynonymGetName(const EnsPGvsynonym gvs);
ajuint ensGvsynonymGetSubidentifier(const EnsPGvsynonym gvs);
AjBool ensGvsynonymSetAdaptor(EnsPGvsynonym gvs,
EnsPGvsynonymadaptor gvsa);
AjBool ensGvsynonymSetIdentifier(EnsPGvsynonym gvs,
ajuint identifier);
AjBool ensGvsynonymSetGvsource(EnsPGvsynonym gvs,
EnsPGvsource gvsource);
AjBool ensGvsynonymSetName(EnsPGvsynonym gvs,
AjPStr name);
AjBool ensGvsynonymSetMoleculetype(EnsPGvsynonym gvs,
AjPStr moleculetype);
AjBool ensGvsynonymSetGvvariationidentifier(EnsPGvsynonym gvs,
ajuint gvvidentifier);
AjBool ensGvsynonymSetSubidentifier(EnsPGvsynonym gvs,
ajuint subidentifier);
size_t ensGvsynonymCalculateMemsize(const EnsPGvsynonym gvs);
AjBool ensGvsynonymTrace(const EnsPGvsynonym gvs, ajuint level);
/* Ensembl Genetic Variation Synonym Adaptor */
EnsPGvsynonymadaptor ensRegistryGetGvsynonymadaptor(
EnsPDatabaseadaptor dba);
/*
** End of prototype definitions
*/
AJ_END_DECLS
#endif /* !ENSGVSYNONYM_H */
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