/usr/lib/emboss/include/ensgvsample.h is in emboss-lib 6.6.0-1.
This file is owned by root:root, with mode 0o644.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 | /* @include ensgvsample *******************************************************
**
** Ensembl Genetic Variation Sample functions
**
** @author Copyright (C) 1999 Ensembl Developers
** @author Copyright (C) 2006 Michael K. Schuster
** @version $Revision: 1.18 $
** @modified 2009 by Alan Bleasby for incorporation into EMBOSS core
** @modified $Date: 2012/08/05 10:59:46 $ by $Author: mks $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA 02110-1301, USA.
**
******************************************************************************/
#ifndef ENSGVSAMPLE_H
#define ENSGVSAMPLE_H
/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */
#include "ensgvdata.h"
AJ_BEGIN_DECLS
/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */
/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */
/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */
/*
** Prototype definitions
*/
/* Ensembl Genetic Variation Sample */
EnsPGvsample ensGvsampleNewCpy(const EnsPGvsample gvs);
EnsPGvsample ensGvsampleNewIni(EnsPGvsampleadaptor gvsa,
ajuint identifier,
AjPStr name,
AjPStr description,
EnsEGvsampleDisplay display,
ajuint size);
EnsPGvsample ensGvsampleNewRef(EnsPGvsample gvs);
void ensGvsampleDel(EnsPGvsample *Pgvs);
EnsPGvsampleadaptor ensGvsampleGetAdaptor(const EnsPGvsample gvs);
AjPStr ensGvsampleGetDescription(const EnsPGvsample gvs);
EnsEGvsampleDisplay ensGvsampleGetDisplay(const EnsPGvsample gvs);
ajuint ensGvsampleGetIdentifier(const EnsPGvsample gvs);
AjPStr ensGvsampleGetName(const EnsPGvsample gvs);
ajuint ensGvsampleGetSize(const EnsPGvsample gvs);
AjBool ensGvsampleSetAdaptor(EnsPGvsample gvs, EnsPGvsampleadaptor adaptor);
AjBool ensGvsampleSetDescription(EnsPGvsample gvs, AjPStr description);
AjBool ensGvsampleSetDisplay(EnsPGvsample gvs, EnsEGvsampleDisplay display);
AjBool ensGvsampleSetIdentifier(EnsPGvsample gvs, ajuint identifier);
AjBool ensGvsampleSetName(EnsPGvsample gvs, AjPStr name);
AjBool ensGvsampleSetSize(EnsPGvsample gvs, ajuint size);
size_t ensGvsampleCalculateMemsize(const EnsPGvsample gvs);
AjBool ensGvsampleTrace(const EnsPGvsample gvs, ajuint level);
EnsEGvsampleDisplay ensGvsampleDisplayFromStr(const AjPStr display);
const char *ensGvsampleDisplayToChar(EnsEGvsampleDisplay gvsd);
/* Ensembl Genetic Variation Sample Adaptor */
EnsPGvsampleadaptor ensRegistryGetGvsampleadaptor(
EnsPDatabaseadaptor dba);
EnsPGvsampleadaptor ensGvsampleadaptorNew(
EnsPDatabaseadaptor dba);
void ensGvsampleadaptorDel(EnsPGvsampleadaptor *Pgvsa);
EnsPBaseadaptor ensGvsampleadaptorGetBaseadaptor(
EnsPGvsampleadaptor gvsa);
EnsPDatabaseadaptor ensGvsampleadaptorGetDatabaseadaptor(
EnsPGvsampleadaptor gvsa);
AjBool ensGvsampleadaptorFetchAllbyDisplay(
EnsPGvsampleadaptor gvsa,
EnsEGvsampleDisplay gvsd,
AjPList gvss);
AjBool ensGvsampleadaptorFetchAllbyIdentifiers(
EnsPGvsampleadaptor gvsa,
AjPTable gvss);
AjBool ensGvsampleadaptorFetchByIdentifier(
EnsPGvsampleadaptor gvsa,
ajuint identifier,
EnsPGvsample *Pgvs);
AjBool ensGvsampleadaptorRetrieveAllIdentifiersBySynonym(
EnsPGvsampleadaptor gvsa,
const AjPStr synonym,
const AjPStr source,
AjPList identifiers);
AjBool ensGvsampleadaptorRetrieveAllSynonymsByIdentifier(
EnsPGvsampleadaptor gvsa,
ajuint identifier,
const AjPStr source,
AjPList synonyms);
/*
** End of prototype definitions
*/
AJ_END_DECLS
#endif /* !ENSGVSAMPLE_H */
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