/usr/lib/emboss/include/embiep.h is in emboss-lib 6.6.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 | /* @include embiep ************************************************************
**
** Isoelectric point routines
**
** @author Copyright (c) 1999 Alan Bleasby
** @version $Revision: 1.16 $
** @modified $Date: 2013/06/29 22:38:19 $ by $Author: rice $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA 02110-1301, USA.
**
******************************************************************************/
#ifndef EMBIEP_H
#define EMBIEP_H
/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */
#include "ajdefine.h"
#include "ajstr.h"
AJ_BEGIN_DECLS
/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */
#define EMBIEPSIZE 28 /* Usual alpha plus two array */
#define EMBIEPCYSTEINE 2 /* Array index for C */
#define EMBIEPLYSINE 10 /* Array index for K */
#define EMBIEPAMINO 26 /* Amino terminus array index */
#define EMBIEPCARBOXYL 27 /* Carboxyl terminus array index */
/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */
/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */
/*
** Prototype definitions
*/
void embIepCalcK (double *K, double **pK);
void embIepCalcKend (double *K, double **pK, ajuint resn, ajuint resc);
AjBool embIepPkNewFile (AjPFile pkfile, double ***pK);
double* *embIepPkNew (void);
void embIepPkDel (double ***pK);
void embIepCompC (const char *s, ajuint amino, ajuint carboxyl,
ajuint sscount, ajuint modlysine,
ajuint *c, ajuint *resn, ajuint *resc);
void embIepCompS (const AjPStr str, ajuint amino, ajuint carboxyl,
ajuint sscount, ajuint modlysine,
ajuint *c, ajuint *resn, ajuint *resc);
double embIepGetCharge (const ajuint *c, const double *pro, double *total);
void embIepGetProto (const double *K, const ajuint *c,
ajuint *op, double H, double *pro);
AjBool embIepIepC (const char *s, ajuint amino, ajuint carboxyl,
ajuint sscount, ajuint modlysine,
double **pK, double *iep, AjBool termini);
AjBool embIepIepS (const AjPStr str, ajuint amino, ajuint carboxyl,
ajuint sscount, ajuint modlysine,
double **pK, double *iep, AjBool termini);
double embIepPhFromHconc (double H);
double embIepPhToHconc (double pH);
double embIepPhConverge (const ajuint *c, const double *K,
ajuint *op, double *pro);
void embIepPkRead (double **pK);
void embIepPkReadFile (double **pK, AjPFile pkfile);
double embIepPkToK (double pK);
double embIepPkFromK (double K);
/*
** End of prototype definitions
*/
#ifdef AJ_COMPILE_DEPRECATED_BOOK
#endif
#ifdef AJ_COMPILE_DEPRECATED
__deprecated void embIepComp (const char *s, ajint amino, ajint carboxyl,
ajint *c);
__deprecated AjBool embIepIEP (const char *s, ajint amino, ajint carboxyl,
double *pK, double *iep, AjBool termini);
#endif
AJ_END_DECLS
#endif /* !EMBIEP_H */
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