/usr/lib/emboss/include/embcom.h is in emboss-lib 6.6.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 | /* @include embcom ************************************************************
**
** General routines for program Complex
**
** NB: THESE ROUTINES DO NOT CONFORM TO THE LIBRARY WRITING STANDARD AND
** THEREFORE SHOULD NOT BE USED AS A TEMPLATE FOR WRITING EMBOSS CODE
**
** @author Copyright (c) 1999 Donata Colangelo
** @version $Revision: 1.11 $
** @modified $Date: 2011/10/18 14:24:24 $ by $Author: rice $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA 02110-1301, USA.
**
******************************************************************************/
#ifndef EMBCOM_H
#define EMBCOM_H
/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */
#include "ajdefine.h"
#include "ajfile.h"
AJ_BEGIN_DECLS
/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */
/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */
/* @data EmbPComTrace *********************************************************
**
** Complex utility trace object
**
** @attr ind [ajint] Index
** @attr pc [float] Percent
******************************************************************************/
typedef struct EmbSComTrace {
ajint ind;
float pc;
} EmbOComTrace;
#define EmbPComTrace EmbOComTrace*
/* @data EmbPComUjwin *********************************************************
**
** Complex utility UJwin object
**
** @attr Ujwin [float*] UJ windows
******************************************************************************/
typedef struct EmbSComUjwin {
float *Ujwin;
} EmbOComUjwin;
#define EmbPComUjwin EmbOComUjwin*
/* @data EmbPComUjsim *********************************************************
**
** Complex utility UJsim object
**
** @attr Ujsim [EmbPComUjwin] UJ sim
******************************************************************************/
typedef struct EmbSComUjsim {
EmbPComUjwin Ujsim;
} EmbOComUjsim;
#define EmbPComUjsim EmbOComUjsim*
/* @data EmbPComSeqsim ********************************************************
**
** Complex utility SEQsim object
**
** @attr Sqsim [char*] Sequence sim
******************************************************************************/
typedef struct EmbSComSeqsim {
char *Sqsim;
} EmbOComSeqsim;
#define EmbPComSeqsim EmbOComSeqsim*
/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */
/*
** Prototype definitions
*/
void embComComplexity(const char *seq,const char *name,
ajint len, ajint jmin, ajint jmax,
ajint l, ajint step, ajint sim, ajint freq, ajint omnia,
AjPFile fp, AjPFile pf,
ajint print, float *MedValue);
void embComWriteValueOfSeq(AjPFile fp, ajint n,const char *name, ajint len,
float MedValue);
void embComWriteFile(AjPFile fp, ajint jmin, ajint jmax, ajint lwin,
ajint step, ajint sim);
void embComUnused (void);
/*
** End of prototype definitions
*/
AJ_END_DECLS
#endif /* !EMBCOM_H */
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