/usr/lib/emboss/include/ajoboread.h is in emboss-lib 6.6.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 | /* @include ajoboread *********************************************************
**
** AJAX OBO reading functions
**
** @author Copyright (C) 2010 Peter Rice
** @version $Revision: 1.10 $
** @modified May 5 pmr 2010 First AJAX version
** @modified Sep 8 2010 pmr Added query and reading functions
** @modified $Date: 2011/10/18 14:23:40 $ by $Author: rice $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA 02110-1301, USA.
**
******************************************************************************/
#ifndef AJOBOREAD_H
#define AJOBOREAD_H
/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */
#include "ajdefine.h"
#include "ajobodata.h"
AJ_BEGIN_DECLS
/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */
/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */
/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */
/*
** Prototype definitions
*/
AjPOboData ajObodataNew(void);
AjPOboData ajObodataParseObofile(AjPFile infile, const char* validations);
AjPObo ajObodataFetchId(const AjPOboData thys, const AjPStr query);
AjPObo ajObodataFetchName(const AjPOboData thys, const AjPStr query);
AjBool ajObolineCutComment(AjPStr *Pline, AjPStr *Pcomment);
AjBool ajObolineCutModifier(AjPStr *Pline, AjPStr *Pmodifier);
AjBool ajObolineCutDbxref(AjPStr *Pline, AjPStr *Pdbxref);
AjBool ajObolineEscape(AjPStr *Pline);
void ajOboallClear(AjPOboall thys);
void ajOboallDel(AjPOboall* pthis);
AjPOboall ajOboallNew(void);
const AjPStr ajOboallGetoboId(const AjPOboall thys);
const AjPStr ajOboallGetQryS(const AjPOboall thys);
void ajOboinClear(AjPOboin thys);
void ajOboinDel(AjPOboin* pthis);
const AjPStr ajOboinGetQryS(const AjPOboin thys);
AjPOboin ajOboinNew(void);
void ajOboinQryC(AjPOboin thys, const char* txt);
void ajOboinQryS(AjPOboin thys, const AjPStr str);
void ajOboinTrace(const AjPOboin thys);
const char* ajOboinTypeGetFields(void);
const char* ajOboinTypeGetQlinks(void);
void ajOboinprintBook(AjPFile outf);
void ajOboinprintHtml(AjPFile outf);
void ajOboinprintText(AjPFile outf, AjBool full);
void ajOboinprintWiki(AjPFile outf);
AjBool ajOboallNext(AjPOboall thys, AjPObo *Pobo);
AjBool ajOboinRead(AjPOboin oboin, AjPObo thys);
ajuint ajOboqueryGetallObofields(const AjPQuery query,
const AjPStr *id, const AjPStr *acc,
const AjPStr *nam, const AjPStr *des,
const AjPStr *up, const AjPStr *div);
AjBool ajOboinformatTerm(const AjPStr term);
AjBool ajOboinformatTest(const AjPStr format);
void ajOboinExit(void);
AjPTable ajOboaccessGetDb(void);
const char* ajOboaccessMethodGetQlinks(const AjPStr method);
ajuint ajOboaccessMethodGetScope(const AjPStr method);
AjBool ajOboaccessMethodTest(const AjPStr method);
/*
** End of prototype definitions
*/
AJ_END_DECLS
#endif /* !AJOBOREAD_H */
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