/usr/share/wise/gene.stat is in wise-data 2.4.1-14.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 | #
# new genestats file
#
splice3 10
ENSE00000673410 TCCCACATAGATCA
ENSE00000673409 TATCCTGCAGTATG
ENSE00000673408 TTTGCTATAGATTA
ENSE00000673407 GGTTTTTCAGTTGC
ENSE00000401072 CTCCCATTAGGGTT
ENSE00000868868 TTATTTCTAGCTGA
ENSE00000401061 CTTTGGTTAGGCAG
ENSE00000673400 GTTCTCCCAGGCCT
ENSE00000673402 TGTTTTATAGGGAT
ENSE00000673403 CTTCTTTCAGAATG
ENSE00000868865 ATTATCTTAGTTTC
ENSE00000662824 ATTTTTTTAGTGGA
ENSE00000662823 TCATTTTTAGGAAC
ENSE00000662822 CAAATTTCAGCCAA
ENSE00000662821 TATTCTACAGGAAG
ENSE00000662820 TATTTGGCAGCCGT
ENSE00000662819 TTTCTTACAGATTA
ENSE00000814444 ATTTTTAAAGCATT
ENSE00000814445 TTTTTTCCAGGGAC
ENSE00000814446 CTCTGTCTAGTTTC
ENSE00000814447 CTGCTTTTAGTCTC
ENSE00000814448 TGGATTTCAGTTTC
ENSE00000789672 TGGCATTTAGAAAT
ENSE00000789671 TTGTCCTCAGATTT
ENSE00000814451 TTTCGGGTAGATCA
ENSE00000814452 TTGCTCCTAGGTTT
ENSE00000789668 TTCCCTACAGGCGA
ENSE00000789652 TTCTTTGCAGTTAT
ENSE00000789653 ATTCATTTAGGCAG
ENSE00000789654 TTTGGATCAGGATA
ENSE00000789655 TTTATTTTAGGAAT
ENSE00000789656 CCCTTCCCAGCAAG
ENSE00000789657 TACATGTAAGACCT
ENSE00000789658 TTCCCTGCAGGATA
ENSE00000789659 TTTTGATTAGGATG
ENSE00000789660 TATATTGCAGATAT
ENSE00000789661 CTTTTTCCAGATAA
ENSE00000789662 TTTATTTCAGCTGG
ENSE00000450960 TGTCCTTCAGAACA
ENSE00000789663 TGTTTCTTAGGTAG
ENSE00000789664 ACCTCTGTAGGCAG
ENSE00000789665 GTTCTTTTAGGACA
ENSE00000789666 TTTTTAATAGGGAA
ENSE00000450963 TCCCTGGCAGACTG
ENSE00000813771 AACTTTTCAGCTCT
ENSE00000813770 TATTACACAGGATT
//
splice5 5
ENSE00000673410 ACTGGTGAGTCCTT
ENSE00000673409 TGAGGTAAGCCTGA
ENSE00000673408 TACGGTAAGTGGTA
ENSE00000673407 TGAAGTAAGGTGCC
ENSE00000401072 CCAAGTAAGTTTTT
ENSE00000868868 TAAGGTGCGTTCAT
ENSE00000401061 AAAAGTAAGTAAAT
ENSE00000673400 AAACGTAAGTTGGA
ENSE00000673402 TGAGGTATGTAAGA
ENSE00000673403 TCAGGTATGACATT
ENSE00000868865 CTATGTGAGTTATG
ENSE00000662824 GTAAGTTATAAGAA
ENSE00000662823 CCATGTAAGTGGTA
ENSE00000662822 TTAGGTAGGTACTA
ENSE00000662821 TCAGGTAGGTACAT
ENSE00000662820 TCAGGTACAGTGAA
ENSE00000662819 CGAGGTATGCAACT
ENSE00000814444 CAGAGTAAGTAACC
ENSE00000814445 AGAGGTAAGCCAGG
ENSE00000814446 GATGGTAAGATGAT
ENSE00000814447 CAGGGTGAGTTGGA
ENSE00000814448 TCAGGTGAGGGCAT
ENSE00000789672 TTAAGTAAGTTCAG
ENSE00000789671 AAAGGTGAATGCTT
ENSE00000814451 ACAGGTCAGAGGCC
ENSE00000814452 GAAGGTAAGAATTA
ENSE00000789668 TGAGGTGAGTACTT
ENSE00000789652 TTAAGTAAGTTTGT
ENSE00000789653 ACAGGTAAAATTTG
ENSE00000789654 TAAGGTAAGGCTTT
ENSE00000789655 ACAGGTAAGAAGAA
ENSE00000789656 TTAGGTAAGCTTCA
//
# A G C T N
intron_emission
0.25 0.25 0.25 0.25 0.25
//
polyp_emission
0.2 0.2 0.3 0.3 0.25
//
rnd_emission
0.25 0.25 0.25 0.25 0.25 1.0
//
rndcodon
AAA 5290.000000
AAC 4795.000000
AAG 8178.000000
AAT 3305.000000
ACA 6240.000000
ACC 7728.000000
ACG 3347.000000
ACT 4930.000000
AGA 8491.000000
AGC 8639.000000
AGG 8997.000000
AGT 4417.000000
ATA 1975.000000
ATC 4973.000000
ATG 6474.000000
ATT 3083.000000
CAA 7057.000000
CAC 6815.000000
CAG 11041.000000
CAT 5779.000000
CCA 10537.000000
CCC 10307.000000
CCG 5621.000000
CCT 10134.000000
CGA 3377.000000
CGC 5146.000000
CGG 5375.000000
CGT 2765.000000
CTA 3502.000000
CTC 7465.000000
CTG 13780.000000
CTT 5453.000000
GAA 7461.000000
GAC 6937.000000
GAG 9975.000000
GAT 4949.000000
GCA 7747.000000
GCC 10890.000000
GCG 4828.000000
GCT 9371.000000
GGA 10143.000000
GGC 10400.000000
GGG 8869.000000
GGT 5567.000000
GTA 2143.000000
GTC 4593.000000
GTG 8189.000000
GTT 3021.000000
TAA 1775.000000
TAC 3687.000000
TAG 1333.000000
TAT 2477.000000
TCA 6180.000000
TCC 7668.000000
TCG 2875.000000
TCT 5767.000000
TGA 7315.000000
TGC 8625.000000
TGG 11718.000000
TGT 5197.000000
TTA 1664.000000
TTC 5462.000000
TTG 4420.000000
TTT 3453.000000
//
|