This file is indexed.

/usr/share/doc/tree-puzzle-doc/examples/EF.phy is in tree-puzzle-doc 5.2-7ubuntu1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
22   915
EFTU_ECOLI--------------SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLA
EFTU_HELPY-------------MAKEKFNRTKPHVNIGTIGHVDHGKTTLSAAISAVLS
EFTU_MYCGE-------------MAREKFDRSKPHVNVGTIGHIDHGKTTLTAAICTVLA
EF1A_SULAC-------------------MSQKPHLNLIVIGHVDHGKSTLIGRLLMDRG
EF1A_DESMO-----------------MSAPQKPHLNIVIIGHVDHGKSTMTGHILYRLG
EF1A_AERPE-------------------MAEKPHMNLVVIGHVDHGKSTLVGHLLYRLG
EF11_HUMAN------------------MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG
EF12_MOUSE------------------MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG
EF1A_CAEEL------------------MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG
EF11_DAUCA------------------MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLG
EF1A_DICDI---------------MEFPESEKTHINIVVIGHVDAGKSTTTGHLIYKCG
EF2_SULAC ------PRYKTVEQVLSLMKDVTRVRNIGIIAHVDHGKTTTSDTLLAASG
EF2_AERPE ----MGARVKVVSEIEKIMRNIDQIRNIGIIAHVDHGKTTTSDSLLAAAG
EF2_DESMO -----MVRFKQTSEVLKIMRNIEQIRNIGITAHVDHGKTTLSDSLLSAAG
EF2_MOUSE -------VNFTVDQIRAIMDKKANIRNMSVIAHVDHGKSTLTDSLVCKAG
EF2_HUMAN -------VNFTVDQIRAIMDKKANIRNMSVIAHVDHGKSTLTDSLVCKAG
EF2_CAEEL -------VNFTVDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG
EF2_DICDI ------MVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAG
EF2_BETVU ------MVKFTADELRAIMDCKHNIRNMSVIAHVDHGKSTLTDSLVAAAG
EFG_ECOLI ----------------ARTTPIARYRNIGISAHIDAGKTTTTERILFYTG
EFG_HELPY ----------------ARKTPLNRIRNIGIAAHIDAGKTTTSERILFYTG
EFG_MYCGE ---------------MSRTVDLKNFRNFGIMAHIDAGKTTTSERILFHSG

KTY---------------GGAARAFDQIDNAPEEKARGITINTSHVEYDT
LKG---------------LAEMKDYDNIDNAPEEKERGITIATSHIEYET
KEG---------------KSAATRYDEIDKAPEEKARGITINSAHVEYSS
FIDEKTVKEAEEAAKKLGKDSEKYAFLMDRLKEERERGVTINLSFMRFET
YFDEKTVKMIEEESKKMGKESFKFAWLLDRMKEERERGVTISLSYMKFET
YIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITIDLTFMKFET
GIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFET
GIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFET
GIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET
GIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET
GIDKRVIEKYEKEASEMGKQSFKYAWVMDKLKAERERGITIDIALWKFET
IIS---------------QKVAGEALALDYLSVEQQRGITVKAANISLYH
IIS---------------ERIAGEALVLDYLNVEKQRGITVKSANVSLYH
LLS---------------EKIAGQALALDYLDVEQKRQMTVKAANASLYH
IIA---------------SARAGETRFTDTRKDEQERCITIKSTAISLFY
IIA---------------SARAGETRFTDTRKDEQERCITIKSTAISLFY
IIA---------------GSKAGETRFTDTRKDEQERCITIKSTAISLFF
IIA---------------DKVSGDMRYMSCRADEQERGITIKSSSVSLHF
IIA---------------QEVAGDVRMTDTRADEAERGITIKSTGISLYY
VNHKI-------------GEVHDGAATMDWMEQEQERGITITSAATTAFW
VSHKI-------------GEVHDGAATMDWMEQEKERGITITSAATTCFW
RIHKI-------------GETHDGESVMDWMEQEKERGITITSAATSVSW

PT----------------------------RHYAHVDCPGHADYVKNMIT
EN----------------------------RHYAHVDCPGHADYVKNMIT
DK----------------------------RHYAHVDCPGHADYIKNMIT
RK----------------------------YFFTVIDAPGHRDFVKNMIT
KK----------------------------YFFTIIDAPGHRDFVKNMIT
KK----------------------------YVFTIIDAPGHRDFVKNMIT
SK----------------------------YYVTIIDAPGHRDFIKNMIT
TK----------------------------YYITIIDAPGHRDFIKNMIT
AK----------------------------YYITIIDAPGHRDFIKNMIT
NK----------------------------YYCTVIDAPGHRDFIKNMIT
SK----------------------------YYFTIIDAPGHRDFIKNMIT
EIDGKG------------------------YVINLIDTPGHVDFSGRVTR
EYEGKP------------------------YVINLIDTPGHVDFSGKVTR
EYKGKP------------------------YLINLIDTPGHVDFQSKTIR
ELSENDLNFIKQSK-------DG-----SGFLINLIDSPGHVDFSSEVTA
ELSENDLNFIKQSK-------DG-----AGFLINLIDSPGHVDFSSEVTA
ELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTA
EMPKEDKLPAGCTS--------------HEFLINLIDSPGHVDFSSEVTA
QMTDEALQSYKGER-------KG-----NDYLINLIDSPGHVDFSSEVTA
SGMAKQYE---------------------PHRINIIDTPGHVDFTIEVER
K----------------------------DHQINLIDTPGHVDFTIEVER
K----------------------------NCSLNLIDTPGHVDFTVEVER

GAAQMDGAILVVAATDG-------PMPQTREHILLGRQVG------VPYI
GAAQMDGAILVVSAADG-------PMPQTREHILLSRQVG------VPHI
GAAQMDGAILVVSATDS-------VMPQTREHILLARQVG------VPKM
GASQADAAILVVSAKKGEYEAGMSAEGQTREHIILSKTMG------INQV
GASQADAAILVVSARKGEFEAGMSAEGQTREHAILARTMG------INQL
GASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMG------IEQI
GTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLG------VKQL
GTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLG------VKQL
GTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLG------VKQL
GTSQADCAVLIIDPTTGGFEAGISKDGQTREHALLAFTLG------VKQM
GTSQADCAVLVIASPTGEFEAGIAKNGQTREHALLAYTLG------VKQM
SLRVLDGSIVVIDAVEGIMTQTETVLRQSLEGRVRPILFINKVDRLIKEL
SLRVLDGAIVVVDAVEGVMTQTETVIRQALEERVRPILFINKVDRLIKEL
ALRVIDGAIVVVDAVEGVMTQTEMYLRVALEERVRPVLFINKIDRLIKEL
ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLMMNKMDRALLEL
ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLMMNKMDRALLEL
ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLEL
ALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLEL
ALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL
SMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANF
SMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANF
SLRVLDGAIAVLDAQMGVEPQTETVWRQASRYEVPRVIFVNKMDKTGANF

IVFLNKCDMVD---DEELLELVEMEVR---ELLSQYDFPGDDTPIVRGSA
VVFLNKQDMVD---DQELLELVEMEVR---ELLSAYEFPGDDTPIVAGSA
VVFLNKCDIAS---DEEVQELVAEEVR---DLLTSYGFDGKNTPIIYGSA
IVAINKMDLADTPYDEKRFKEIVDTVS---KFMKSFGFDMNKVKFVPVVA
IVAINKMDATEPPYSEKRYNEIKEILG---KFLKGLGYDVSKIPFIPISA
IVAVNKMDAPDVNYDQKRYEFVVSVLK---KFMKGLGYQVDKIPFIPVSA
IVGVNKMDSTEPPYSQKRYEEIVKEVS---TYIKKIGYNPDTVAFVPISG
IVGVNKMDSTEPAYSEKRYDEIVKEVS---AYIKKIGYNPATVPFVPISG
IVACNKMDSTEPPFSEARFTEITNEVS---GFIKKIGYNPKAVPFVPISG
ICCCNKMDATTPKYSKARYDEIVKEVS---SYLKKVGYNPEKIAFVPISG
IVAINKMDEKSTNYSQARYDEIVKEVS---SFIKKIGYNPEKVAFVPISG
KLSSQEIQKRLIDLIIEVNNLIETYGEP--EFKDQWKIKPELGNVVFGSA
KLPPEKIQQRFVEIIKEVNNLIDLYAEP--EFRKKWKLDPNAGMVAFGSA
R-SPNEIQQRLVQIVKDVNTLIATYADK--EFQKAWLLDPMKG-QAFGSA
QLEPEELYQTFQRIVENVNVIISTYGEGESGPMGNIMIDPVLGTVGFGSG
QLEPEELYQTFQRIVENVNVIISTYGEGESGPMGNIMIDPVLGTVGFGSG
QLGAEELFQTFQRIVENINVIIATYGD-DDGPMGPIMVDPSIGNVGFGSG
QLNTEEAYLSFRRAIESVNVIVGNTED---KEFGDVTVSPEKGTVAFGSG
QVDGEEAYTTFQKVIENANVIMATYED---PLLGDVQVYPEKGTVAFSAG
LKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVT
YNVENQIKLRLKANPVPINIPIGAEDTFIGVIDLVQMKAIVWNNETMGAK
ERSVLSIQQRLGVKAVPIQFPIGAENDFNGIIDIITKKAYFFDG-NKEEN

LKALEGD----------AEWEAK---------------------------
LRALEEAKAG-----NVGEWGEK---------------------------
LKALEGD----------PKWEAK---------------------------
PDGDNVTHKS-----TKMPWYN----------------------------
WTGENLIERS-----PNMPWYN----------------------------
WKGDNLIERS-----PNMPWYN----------------------------
WNGDNMLEPS-----ANMPWFKGWKVT-----------------------
WHGDNMLEPS-----PNMPWFKGWKVE-----------------------
FNGDNMLEVS-----SNMPWFKGWAVE-----------------------
FEGDNMIERS-----TNLDWYK----------------------------
WNGDNMLERS-----DKMEWYK----------------------------
KDKWGFSVP-----MAGKRGVK----------------------------
KDKWGISVP-----QVKKKGIT----------------------------
RDRWGLTIP-----LVQQKGIK----------------------------
LHGWAFTLKQFAEMYVAKFAAKGEGQLSAAERAKKVEDMMKKLWGDRYFD
LHGWAFTLKQFAEMYVAKFAAKGEGQLGPAERAKKVEDMMKKLWGDRYFD
LHGWAFTLKQFAEMYAGKFGVQ-------------VDKLMKNLWGDRFFD
LHGWGFTLGRFAKLYAAKFGDP-------------EDKLMGRLWGDSYFD
LHGWAFTLSNFAKMYASKFGVD-------------ESKMMERLWGENFFD
FEYEDIPADMVELANEWHQNLIESAAE-----------------------
YDVEEIPSDLLEKAKEYREKLVEAVAE-----------------------
AIEKPIPEQYVDQVEKLYNNLVEEVAS-----------------------

--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
---------------------------------FSDVVNAYTSGDKAKIE
---------------------------------FREIIQAYEKG-KEAVA
---------------------------------FSDIVDVYTKG-KEAVA
PANGKFSKSANSPDGKKLPRTFCQLILDPIFKVFDAIMNFRKEETAKLIE
PANGKFSKSATSPEGKKLPRTFCQLILDPIFKVFDAIMNFKKEETAKLIE
LKTKKWSSTQTD-ESK---RGFCQFVLDPIFMVFDAVMNIKKDKTAALVE
ATAKKWTSNPQSADGKALPRAFCQFVLEPIYQLTRAIVDEDAVKLEKMMK
PATKKWTTKNSG--NASCKRGFVQFCYEPIKQIIAACMNDQKDKLLAHVT
--------------------------------ASEELMEKYLGGEELTEA
--------------------------------QDEALMEKYLGGEELSIE
--------------------------------LDDQLMADYLDGKPIEID

-----------------------------ILELAGFLDSYIPEPERAI--
-----------------------------VLKLMAEVDAYIPTPERDT--
-----------------------------IHDLIKAVDEWIPTPTREV--
-----------------------------GPTLEELLDQLEI-PPKPV--
-----------------------------GPTLVEALDTLEV-PPKPI--
-----------------------------GPTLVEALDQLQP-PAKPV--
----------------------RKDGNASGTTLLEALDCILP-PTRPT--
----------------------RKEGNASGVSLLEALDTILP-PTRPT--
----------------------RKEGNASGKTLLEALDSIIP-PQRPT--
-----------------------------GPTLLDALDQINE-PKRPS--
-----------------------------GPTLLEALDAIVE-PKRPH--
ELASKV---------------------PIHEALLDAVIKFVPNPRDSQKY
ELSKKM---------------------PLHETLLDMVIKFVPNPREAQRY
ELQKAA---------------------PLHEAILDMVVKYVPNPRDAQRY
KLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKY
KLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKY
KLGIKLANDEKDLEGKPLMKVFMRKWLPAGDTMLQMIAFHLPSPVTAQKY
TLQITLAPEDAEIKGKQLVKAVMRKFLPAADAILSMIVTHLPSPLVAQKY
KLGIQMKTEEKDLMGRPLMKRVMQTWLPASSALLEMMIHHLPSPATAQRY
EIKGALRQRVLNNEIILVTCG-SAFKNKGVQAMLDAVIDYLPSP-----V
EIKKGIKAGCLNMSLVPMLCG-SSFKNKGVQTLLDAVIDYLPAP-----T
AIKNAIRNGVIHCKFFPVLCG-SAFKNKGIKLLLDAVVDFLPSP-----V

-----------------------DKPFLLPIEDVFSISGRG-TVVTGRVE
-----------------------EKTFLMPVEDVFSIAGRG-TVVTGRIE
-----------------------DKPFLLAIEDTMTITGRG-TVVTGRVE
-----------------------DKPLRIPIQEVYSISGVG-VVPVGRIE
-----------------------NKPLRIPIQDVYNISGIG-VVPVGRVE
-----------------------DKPLRIPVQNVYSIPGAG-TVPVGRVE
-----------------------DKPLRLPLQDVYKIGGIG-TVPVGRVE
-----------------------DKPLRLPLQDVYKIGGIG-TVPVGRVE
-----------------------DRPLRLPLQDVYKIGGIG-TVPVGRVE
-----------------------DKPLRLPLQDVYKIGGIG-TVPVGRVE
-----------------------DKPLRIPLQDVYKIGGIG-TVPVGRVE
RIPKIWKGDLDSEIAKAMINADPNGPIVMMINDMKVDPHAG-LVATGRVF
RIPKIWKGDINSEIGQAMLNADPDGPLVFFINDVRIE-KAG-LVATGRVF
RIPKIWHGDLNHEAVKYMMEADPNGPLVMLVNDIRVDPHAG-LVATGRIY
RCELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVF
RCELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVF
RMEMLYEGPHDDEAAVAIKTCDPNGPLMMYISKMVPTSDKGRFYAFGRVF
RCANLYEGPMDDECAVAIQKCDPNGPLMMYVSKMVPTSDKGRFYAFGRVF
RVENLYEGPMDDVYATAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVF
DVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVG-NLTFFRVY
EVVDIKG-IDPKTEEEVFVKSSDDGEFAGLAFKIMTDPFVG-QLTFVRVY
DVPPAKA--IDANNKEISIKASDDANFIGLAFKVATDPFVG-RLTFIRVY

RGIIKVGEEVEIVGIK-----------ETQKSTCTGVEMFRKLLDEGRAG
RGVVKVGDEVEIVGIR-----------PTQKTTVTGVEMFRKELEKGEAG
RGELKVGQEVEIVGLK-----------PIRKAVVTGIEMFKKELDSAMAG
SGVLKVGDKIVFMPVG-------------KIGEVRSIETHHTKIDKAEPG
TGVLKVGDKLVFMPAG-------------LVAEVKTIETHHTKIEKAEPG
TGVLRVGDKVVFMPPG-------------VVGEVRSIEMHYQQLQQAEPG
TGVLKPGMVVTFAPVN-------------VTTEVKSVEMHHEALSEALPG
TGILRPGMVVTFAPVN-------------ITTEVKSVEMHHEALSEALPG
TGIIKPGMVVTFAPQN-------------VTTEVKSVEMHHESLPEAVPG
TGTIKPGMVVTFGPSG-------------LTTEVKSVEMHHESLLEALPG
TGIIKPGMVVTFAPAG-------------LSTEVKSVEMHHEQLPEARPG
SGTLRAGEEVWLVNAKRQ---------QRILQVSLYMGAIRELAEEIPVG
SGTLRSGEEVYLLNAGKK---------SRLLQVSIYMGPFREVTKEIPAG
SGTLRAGEEVWLVNARVP---------QRVLQVSLYMGPYRELADEITAG
SGVVSTGLKVRIMGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCG
SGLVSTGLKVRIMGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCG
SGKVATGMKARIQGPNYVPGKKEDLYEKTIQRTILMMGRFIEPIEDIPSG
SGIIVPVKRSELWVSTYVPGKKDDLFLKSIQRTVLMMGRKTEQIEDCPCG
AGKVSTGMKVRIMGPNYVPGEKKDLYVKNVQRTVIWMGKKQETVEDVPCG
SGVVNSGDTVLNSVKAAR---------ERFGRIVQMHANKREEIKEVRAG
RGKLESGSYVYNSTKDKK---------ERVGRLLKMHSNKREDIKEVYAG
AGVLKSGSYVKNVRKNKK---------ERVSRLVKMHAQNRNEIDEIRAG

ENVGVL--------------------------LRGIKREEIERGQVLAKP
DNVGVL--------------------------LRGTKKEEVERGMVLCKP
DNAGVL--------------------------LRGVERKEVERGQVLAKP
DNIGFN--------------------------VRGVEKKDVKRGDVAGSV
DNIGFN--------------------------VKGVEKKDIKRGDVAGSL
DNIGFA--------------------------VRGVSKSDIKRGDVAGHL
DNVGFN--------------------------VKNVSVKDVRRGNVAGDS
DNVGFN--------------------------VKNVSVKDIRRGNVCGDS
DNVGFN--------------------------VKNVSVKDIRRGSVCSDS
DNVGFN--------------------------VKNVSVKDLKRGYVASNS
DNVGFN--------------------------VKNVSVKEIKRGMVAGDS
NIAAALGMDAARSGETGVDIRFKDSVLGSFEKLHYISEPVVTISVEPRNP
NIGAVMGFEDVRAGETVVSLGYEE-NAAPFESLRYVSEPVVTIAVEPVKI
NIAAALALEKARSGETVVAMKYKD-SMTPFEKLRMITESVVTVAIEPKNP
NIVGLVGVDQFLVKTGTITT-FEH--AHNMRVMKFSVSPVVRVAVEAKNP
NIVGLVGVDQFLVKTGTITT-FEH--AHNMRVMKFSVSPVVRVAVEAKNP
NIAGLVGVDQYLVKGGTITT-YKD--AHNMRVMKFSVSPVVRVAVEAKNP
NIVGLVGVDQFLVKSGTITT-SEV--AHNIRVMKFSVSPVVRVAVEPKNP
NTVALVGLDQYITKNATLTN-EKESDAHPIRAMKFSVSPVVRVAVQCKVA
DIAAAIGLKDVTTGDTLCDPDAP-----IILERMEFPEPVISIAVEPKTK
EICAFVGLKDTLTGDTLCDEKNA-----VVLERMEFPEPVIHIAVEPKTK
DICAVIGLKDTTTGETLTDDKLD-----VQLEAMQFAEPVISLAVEPKTK

GTIKPHT----KFESEVYILSK--DEGGRHTPFFKGYRPQFYFRTTDVTG
GSITPHK----KFEGEIYVLSK--EEGGRHTPFFTNYRPQFYVRTTDVTG
GSIKPHK----KFKAEIYALKK--EEGGRHTGFLNGYRPQFYFRTTDVTG
QNPPTVA---DEFTAQVIVIWHPTAVGVGYTPVLHVHTASIACRVSEITS
DVPPTVA---DEFTARIMVMWHPTAIAVGYTPVIHVHTASVACRITEIIA
DKPPTVA---EEFEARIFVIWHPSAITVGYTPVIHVHTASVSSRIIEIKA
KNDPPME--AAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKE
KADPPQE--AAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKE
KQDPAKE--ARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKE
KDDPAKG--AASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLT
KNDPPQE--TEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVD
KDLTKMIDALRKLSIEDSNLVVKINEETGEYLLSGMGFLHLEVSLQLLKE
QDLPKMIEALRKLTIEDPNLVVKINEETGEYLLSGMGPLHLEIALTMLRE
QQLTKLVDALYKLHLEDPSLIVKINEETGEYLLSGVGTLHIEIALTLLKD
ADLPKLVEGLKRLAKSDPMVQCII-EESGEHIIAGAGELHLEICLKDLEE
ADLPKLVEGLKRLAKSDPMVQCII-EESGEHIIAGAGELHLEICLKDLEE
ADLPKLVEGLKRLAKSDPMVQCIF-EESGEHIIAGAGELHLEICLKDLEE
SDLPKLVEGLKRLAKSDPCVLCYS-EESGEHIVAGAGELHLEICLKDLAE
SDLPKLVEGLKRLAKSDPMVVCSI-EESGEHIIAGAGELHLEICLKDLQD
ADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKR
ADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKR
ADQEKMSIALSKLAEEDPTFKTFSDPETGQTIIAGMGELHLDILVDRMKR

TIEL----PEG---------------------------------------
SITL----PEG---------------------------------------
SIAL----AEN---------------------------------------
RIDP----KTGKEAEKN---------------------------------
KIDP----RTGKEIEKN---------------------------------
KLDP----KTGQVVEQN---------------------------------
KIDR----RSGKKLEDG---------------------------------
KIDR----RSGKKLEDN---------------------------------
KVDR----RTGKKVEDF---------------------------------
KIDR----RSGKELEKE---------------------------------
KVDR----RTGAVVAKEGTA------------------------------
N-YG-LDVVTTPPIVVYR--ESIRNKS-QVFEGKSPNKHNKLYISVEPLN
K-FG-VEVKASPPIVVYR--ETVRQQS-RVFEGKSPNKHNKLYISVEPLN
L-YG-LEVVASPPVIVYR--ETVRESS-QVFEGKSPNKHNKFYISVAPLN
DHAC-IPIKKSDPVVSYR--ETVSEESNVLCLSKSPNKHNRLYMKARPFP
DHAC-IPIKKSDPVVSYR--ETVSEESNVLCLSKSPNKHNRLYMKARPFP
DHAC-IPLKKSDPVVSYR--ETVQSESNQICLSKSPNKHNRLHCTAQPMP
DHAG-IEIKTTDPVVSFR--ESV---------------------KASPIS
DFMGGAEIIKSDPVVSFR--ETVLDRSVRTVMSKSPNKHNRLYMEARPME
EFNV--EANVGKPQVAYR--ETIRQKVTDVEGKHAKQSGGRGQYGHVVID
EFKV--EAEIGQPQVAFR--ETIRSSVS-KEHKYAKQSGGRGQYGHVFIK
EFKV--EVNIGAPQVSFR--ETFKSTSE-VEGKYIKQSGGRGQYGHVKIR

--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
NQTIDLIANG-TIKEDMDN----KEMAKILRDQAEWDYDEAKKIVAIDEN
EETITLIQNG-AVTEDQDP----KDRARILADKAGWDYNEARKIWAIDEN
EETLRLMSEG-IIVEDMDA----RERAKILREQAGWDADEARRIMAIDEN
DGLAEDIDKG-EVSARQEL----KARARYLAEKYEWDVAEARKIWCFGPD
DGLAEDIDKG-EVSARQEL----KQRARYLAEKYEWDVAEARKIWCFGPD
DGLADDIEGG-TVNARDEF----KARAKILAEKYEYDVTEARKIWCFGPD
MELQDLIEAGSDISSKDDP----KARANYLADNHEWDKNDAMNIWSFGPE
EGLAEAIDEG-RIGPRDDP----KNRSKILAEEYGWDKDLAKKIWCFGPE
MYPLEPGSNP----------------------------------------
LEPKEPGS------------------------------------------
FEP-NKDK------------------------------------------

------VEMVMPGDNIKMVVTLIHPIAMDDGL------RFAIREGGRTVG
------VEMVMPGDNVKITVELISPVALELGT------KFAIREGGRTVG
------TEMVLPGDNASITVELIAPIACEKGS------KFSIREGGRTVG
------PQFIKAGDSAIVKFKPIKELVAEKFREFPALGRFAMRDMGKTVG
------PHFLKQGDIAIVKFKPIKPLVVEKYSDFQGLGRFAMRDMGKTIG
------PQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTVG
------PKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVA
------PKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVA
------PKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVA
------PKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRFAVRVMRQTVA
------AVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVA
---INVFIDATSGVQHLREIMDTLLQGFRLAMKEGPLAFEPVRGVKVVLH
---INVFVDKTAGVQYLREVKDTIIAGFRLALKEGPLAAEPVRGVKVVLH
---LNMLVDMTTGVQYLREIKDTVIQGFRLAMKEGPLAMEPVRGVKVVLH
GTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVH
GTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVH
GTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREGVLSDENMRGVRFNVH
GNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMRGIRFNLY
TTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVC
--KGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLH
---GYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPVVDFKVTLY
---GFEFVDKIVGGRIPREYIKPVQTGLENAMNSGPLAGYPMIDIKATLF

AGVVAKVLS-----------------------------------------
AGVVSNIIE-----------------------------------------
AGTVTEVLE-----------------------------------------
VGVIIDVKPRKVEVK-----------------------------------
IGQVLEIKPAQVNIKK----------------------------------
IGIVTDVKPAKVDIKAK---------------------------------
VGVIKAVDKKAAGAGKVTKSAQKAQKAK----------------------
VGVIKNVEKKSGGAGKVTKSAQKAQKAGK---------------------
VGVIKSVEKSDGSSGKVTKSAQKAAPKKK---------------------
VGVIKAVEKKDPTGAKVTKAAAKKGAK-----------------------
VGVIKSTVKKAPGKAGDKKGAAAPSKKK----------------------
DAVVHEDPAHRGPAQLYPAVRNAIFAGILTSKPTLLEPLQKLDIRIPMEY
DAVIHEDPVHRGPGQLYPAVRNAIWAGILDGRPTLLEPLQKLDIRAPMEY
DAVVHEDPAHRGPAQIFPAVRNAIFAGFLTAKPTILEPILKLDIRTPMEY
DVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQV
DVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQV
DVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAA
DVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENA
DVVLHTDAIHRGGGQIIPTARRVFYASQLTAKPRLLEPVYLVEIQAPENA
FGSYHDVDSSE--LAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEEN
DGSYHDVDSSE--MAFKIAGSMAFKEASRAANPVLLEPMMKVEVEVPEEY
DGSFHEVDSSE--MAFKIAASLALKEAGKQCNPVLLEPIMAIEVTVPEQY

--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
LGNVTAVITRKRGKVINVVQT--GNVARVYAEIPVGESFELASELRASSA
LSNITAVLTRKRGRIINVETT--GVMARIIAAIPVAESFDLAGELRSATA
IGNISTVITKKRGKLIEVQQM--ETSARVIAEIPVSESFDIADMLRNVTA
VGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTG
VGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTG
VGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTG
IGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESLRFTADLRSHTA
LGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRASTS
TGDVIGDLSRRRGMLKGQESE--VTGVKIHAEVPLSEMFGYATQLRSLTK
MGDVIGDLNRRRGQINSMDDR--LGLKIVNAFVPLVEMFGYSTDLRSATQ
FGDTMGDISSRRGIIEGTEQR--DNVQLIKAKVPLKEMFGYATDLRSFSQ

--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
GRAFWGTEFSRWAPVP------DSILVDLIMKIRERKGKPKQLPKVEDFI
GRAFWGVEFYGWAPVP------DQMLQDLIAKIRQRKGLPPSPPKIDDLI
GKAIWGQEFSRWAPVP------ESMLMDLVSKIRTRKGLKPEPPKLEDFL
GQAFPQCVFDHWQILPGDPFDNSSRPSQVVAETRKRKGLKEGIPALDNFL
GQAFPQCVFDHWQILPGDPFDNSSRPSQVVAETRKRKGLKEGIPALDNFL
GQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVPALDNYL
GQAFPQCVFDHWASIG--VVNKDKKATEVALATRKRKGLAPEIPALDKFH
GQAFPQCVFDHWEMMPSDPLEAGSQASTLVSVIRKRKGLKEQMTPLSEFE
GRASYTMEFLKYDEAP------SNVAQAVIEARGK---------------
GRGTYSMEFDHYGEVP------SNIAKEIVEKRKG---------------
GRGNYVMQFSHYAETP------KSVVNEIIANKK----------------

---------------
---------------
---------------
---------------
---------------
---------------
---------------
---------------
---------------
---------------
---------------
S--------------
GP-------------
SP-------------
DKL------------
DKL------------
DKM------------
RKTINNLSHTLSFQI
DKL------------
---------------
---------------
---------------