/usr/share/ray/scripts/xsl-xml/Taxons-to-tsv-phylum.xsl is in ray-extra 2.3.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 | <?xml version="1.0" encoding="UTF-8"?>
<xsl:stylesheet version="1.0"
xmlns:xsl="http://www.w3.org/1999/XSL/Transform">
<xsl:output method="text" indent="yes" encoding="utf-8" standalone="yes"/>
<xsl:strip-space elements="*"/>
<xsl:template match="/">
<xsl:text>#Rank Taxon Colored k-mer observations Colored proportion
</xsl:text>
<xsl:for-each select="root/entry">
<xsl:sort data-type="number" order="descending" select="recursive/assembledKmerObservations" />
<xsl:if test="taxon/rank/text() = 'phylum'">
<xsl:text>phylum </xsl:text>
<xsl:value-of select="taxon/name"/>
<xsl:text> </xsl:text>
<xsl:value-of select="recursive/assembledKmerObservations"/>
<xsl:text> </xsl:text>
<xsl:value-of select=" recursive/coloredProportionInRank"/>
<xsl:text>
</xsl:text>
</xsl:if>
</xsl:for-each>
</xsl:template>
</xsl:stylesheet>
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