r-cran-multcomp 1.3-1-1 / usr / lib / R / site-library / multcomp / NEWS

		CHANGES in `multcomp' VERSION 1.3-0

    o    new glht method for multiple marginal models and corresponding
         linear functions implements Pipper, Ritz, Bisgaard (2012),
         see ?mmm

		CHANGES in `multcomp' VERSION 1.2-21

    o    fix broken vignette PDF files

    o    remove all Rout.save files; these can be downloaded
         from R-forge.R-project.org now

		CHANGES in `multcomp' VERSION 1.2-20

    o    make sure to use par(no.readonly = TRUE)
         TH.data

		CHANGES in `multcomp' VERSION 1.2-19

    o    fix broken vignette PDFs

		CHANGES in `multcomp' VERSION 1.2-18

    o    improve plotting one-sided confidence intervals


		CHANGES in `multcomp' VERSION 1.2-17

    o    fix typo in DESCRIPTION file


		CHANGES in `multcomp' VERSION 1.2-16

    o    allow for levels with "-" and other special symbols for cld()

    o    fix cld(..., decreasing = TRUE) problem (thanks to Luciano Selzer)


		CHANGES in `multcomp' VERSION 1.2-15

    o    fix DESCRIPTION file entries


		CHANGES in `multcomp' VERSION 1.2-14

    o    catch download errors in vignette


		CHANGES in `multcomp' VERSION 1.2-13

    o    interaction terms can now be part of linear function


		CHANGES in `multcomp' VERSION 1.2-12

    o    model.matrix.polr returns intercept which needs to be removed


		CHANGES in `multcomp' VERSION 1.2-11

    o    handle merMod objects (package lme4 aka lme4Eigen)


		CHANGES in `multcomp' VERSION 1.2-10

    o    handle polr objects in package, not only in vignette

    o    move vignettes


		CHANGES in `multcomp' VERSION 1.2-9

    o    new coxme methods


		CHANGES in `multcomp' VERSION 1.2-8

    o    new argument `decreasing' for cld(), code donated
         by Luciano Selzer <luciano.selzer@gmail.com>


		CHANGES in `multcomp' VERSION 1.2-7

    o    new examples on 2-way ANOVA models, potentially with interactions,
         in vignette `multcomp-examples'


		CHANGES in `multcomp' VERSION 1.2-6

    o    `manual' na.omit before stepAIC is called in
          chfls1.Rnw vignette

    o    use lmrob.control(setting = "KS2011") in generalsiminf.Rnw


		CHANGES in `multcomp' VERSION 1.2-5

    o    missing comment in multcomp_VA.R


		CHANGES in `multcomp' VERSION 1.2-4

    o   fix problem with plot.glht (lwd = 0 does not make sense)


		CHANGES in `multcomp' VERSION 1.2-3

    o   new example on frailty models, see ?cml


		CHANGES in `multcomp' VERSION 1.2-2

    o   fix dependencies, really

    o   add book to DESCRIPTION file


		CHANGES in `multcomp' VERSION 1.2-1

    o   fix dependencies


		CHANGES in `multcomp' VERSION 1.2-0

    o   demos for "Multiple Comparisons Using R" by
        Bretz, Hothorn & Westfall (2010)


		CHANGES in `multcomp' VERSION 1.1-8

    o   example on simultaneous tests against one- and
        two-sided alternatives in ?glht.


		CHANGES in `multcomp' VERSION 1.1-7

    o   mix of alternatives is currently not supported 
        and also mcp() gives and error now.


		CHANGES in `multcomp' VERSION 1.1-6

    o   quantiles for confidence intervals
        used `tail = upper.tail' for `alternative = less'
        and `tail = lower.tail' for `alternative = greater'.
        This has been changed.

    o   prepare for multcomp book:
        - SAS code in inst/MCMT
        - new demos

    o   source code for simulations with unbalanced heteroscedstic
        designs added


		CHANGES in `multcomp' VERSION 1.1-5

    o   fix small problems in `cld' spotted by 
        Peter B. Mandeville <mandevip@hotmail.com>


		CHANGES in `multcomp' VERSION 1.1-4

    o   more example data sets


		CHANGES in `multcomp' VERSION 1.1-3

    o   bugfix for models without intercept and more than one factor

    o   print calls when available only

    o   support for coxme objects

    o   allow xlab and ylab arguments for plot.cld

    o   systolic blood pressure data set added


		CHANGES in `multcomp' VERSION 1.1-2

    o   mcp may average over interactions and covariates (Experimental!)

    o   ylim argument to plot

    o   update to survival 2.35-7


		CHANGES in `multcomp' VERSION 1.1-1

    o    better handling of model.frames in `cld'


		CHANGES in `multcomp' VERSION 1.1-0

    o    new compact letter displays

    o    force binary mode when downloading SPSS data files


		CHANGES in `multcomp' VERSION 1.0-8

    o    new vignette containing supplementary material
         for a letter on Pollet \& Nettle (2009, 
         Evolution and Human Behavior)

    o    references updated


		CHANGES in `multcomp' VERSION 1.0-7

    o    new default for missing linfct: inference over
         all parameters as given by coef(model)

    o    new function cftest, similar to lmtest:::coeftest


		CHANGES in `multcomp' VERSION 1.0-6

    o    better names for p-values (feature request by Achim Zeileis)


		CHANGES in `multcomp' VERSION 1.0-5

    o    update vignette


		CHANGES in `multcomp' VERSION 1.0-4

    o    fix Rd problems


		CHANGES in `multcomp' VERSION 1.0-3

    o    use isSymmetric(vcov, tol = sqrt(.Machine$double.eps)
         to check for symmetry of covariance matrices in `parm'
         (suggested by Fritz)

    o    better error messages suggested by Rich


		CHANGES in `multcomp' VERSION 1.0-2

    o    use new model.matrix / model.frame methods for class mer in
         lme4 (>= 0.999375-16)


		CHANGES in `multcomp' VERSION 1.0-1

    o    make sure more than 2 groups are present in contrMat()

    o    check if `model' is an S4 object before trying to extract its
         `call' slot

    o    better warning when df.residual fails


		CHANGES in `multcomp' VERSION 1.0-0

    o    unify both vignettes

    o    mcp() doesn't try to take care of interaction terms anymore


		CHANGES in `multcomp' VERSION 0.993-3

    o    new `parm' function for specifying model parameters estimated
         elsewhere

    o    improve print method for confidence intervals

    o    new adjustment method `free' (for free combinations)


		CHANGES in `multcomp' VERSION 0.993-2

    o    make sure names are printed correctly when nrow(K) = 1

    o    interaction terms are now correctly handled when a symbolic
         descripton of the hypotheses is supplied, thanks to 
         Antonio Fabio Di Narzo for spotting.


		CHANGES in `multcomp' VERSION 0.993-1

    o    new vignette `Simultaneous Inference in General Parametric Models'

    o    warn if ... arguments are ignored

    o    levels in trees513 data slightly changed.


		CHANGES in `multcomp' VERSION 0.992-9

    o    remove deprecated functions simint and simtest (the files
         are still available from multcomp/inst/deprecated)

    o    better error message when factors specified in mcp() aren't
         found in model


		CHANGES in `multcomp' VERSION 0.992-8

    o    add model.frame and model.matrix methods for class `lme'
         (feature request by Antonio Rausell <arausell@cnio.es>)

    o    new data set `trees513'


		CHANGES in `multcomp' VERSION 0.992-7

    o    new contrasts `UmbrellaWilliams' and `GrandMean'
         (thanks to Daniel Gerhard <gerhard@biostat.uni-hannover.de>)


		CHANGES in `multcomp' VERSION 0.992-6

    o    add support for lme4::(g)lmer2 objects (thanks to Manuel Eugster)

    o    coef. and vcov. didn't always pass through, spotted by
         John Deke <jdeke73@gmail.com>


		CHANGES in `multcomp' VERSION 0.992-5

    o    remove non_function entries in Rd files


		CHANGES in `multcomp' VERSION 0.992-4

    o    update to mvtnorm 0.8-0


		CHANGES in `multcomp' VERSION 0.992-3

    o    better support for `mer', `lmer' and `glmer' objects
         (package `lme4')


		CHANGES in `multcomp' VERSION 0.992-2

    o    add support for `lme' objects (feature request by
         John Wilkinson <jnwilks@btinternet.com> and Dieter Menne
         <dieter.menne@menne-biomed.de>)


		CHANGES in `multcomp' VERSION 0.992-1

    o    fix LaTeX problem in vignette (spotted by Brian D. Ripley)


		CHANGES in `multcomp' VERSION 0.991-9

    o    fix some minor problems spotted for plotting or
         printing of confidence intervals (thanks for Rich Heiberger and
         Ludwig Hothorn)


		CHANGES in `multcomp' VERSION 0.991-8

    o    make sure `type' is available

    o    catch errors with `aovlist' objects

    o    print for confint method indicates if confidence 
         intervals are adjusted or univariate


		CHANGES in `multcomp' VERSION 0.991-7

    o    try to deal with non-estimable coefficients in `model': if the
         correspondings columns of `linfct' are zero anyway, we silently
         proceed. If not, we stop and ask for a correctly specified model.

    o    try to detect interactions with numeric covariates. We need to
         choose a specific value here but it seems hard to add 
         something appropriate to the user interface (I don't want to touch
         `mcp'). For the time being, we fire a warning and the user can 
         modify `linfct' manually.

    o    add mcp(<name> = "Means"), contribution by Richard M. Heiberger
         <rmh@temple.edu>

    o    add Rich to DESCRIPTION file


		CHANGES in `multcomp' VERSION 0.991-5

    o    plot.confint allows for specification of xlim, xlab and main
         (patch by Rich Heiberger)


		CHANGES in `multcomp' VERSION 0.991-4

    o    Depends: stats

    o    confint(..., calpha = x) can be used to specify critical
         values directly (with x being either a function or a scalar)


		CHANGES in `multcomp' VERSION 0.991-3

    Implement feature requests by Rich Heiberger <rmh@temple.edu>:

    o    glht.mcp adds a `focus' element to the returned object
         containing the names of the factors under test

    o    plot.glht calls plot.confint.glht

    o    documentation updates

    o    fixed three minor bugs


		CHANGES in `multcomp' VERSION 0.991-2

    o    mcp(fact = K) with K = contrMat(...) didn't work
         spotted by Yves Brostaux <brostaux.y@fsagx.ac.be>