/usr/share/doc/quantum-espresso/html/node11.html is in quantum-espresso-data 5.0.2-5build1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 | <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">
<!--Converted with LaTeX2HTML 2008 (1.71)
original version by: Nikos Drakos, CBLU, University of Leeds
* revised and updated by: Marcus Hennecke, Ross Moore, Herb Swan
* with significant contributions from:
Jens Lippmann, Marek Rouchal, Martin Wilck and others -->
<HTML>
<HEAD>
<TITLE>2.4 Libraries</TITLE>
<META NAME="description" CONTENT="2.4 Libraries">
<META NAME="keywords" CONTENT="user_guide">
<META NAME="resource-type" CONTENT="document">
<META NAME="distribution" CONTENT="global">
<META NAME="Generator" CONTENT="LaTeX2HTML v2008">
<META HTTP-EQUIV="Content-Style-Type" CONTENT="text/css">
<LINK REL="STYLESHEET" HREF="user_guide.css">
<LINK REL="next" HREF="node12.html">
<LINK REL="previous" HREF="node10.html">
<LINK REL="up" HREF="node7.html">
<LINK REL="next" HREF="node12.html">
</HEAD>
<BODY >
<!--Navigation Panel-->
<A NAME="tex2html253"
HREF="node12.html">
<IMG WIDTH="37" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="next" SRC="next.png"></A>
<A NAME="tex2html249"
HREF="node7.html">
<IMG WIDTH="26" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="up" SRC="up.png"></A>
<A NAME="tex2html243"
HREF="node10.html">
<IMG WIDTH="63" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="previous" SRC="prev.png"></A>
<A NAME="tex2html251"
HREF="node1.html">
<IMG WIDTH="65" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="contents" SRC="contents.png"></A>
<BR>
<B> Next:</B> <A NAME="tex2html254"
HREF="node12.html">2.5 Compilation</A>
<B> Up:</B> <A NAME="tex2html250"
HREF="node7.html">2 Installation</A>
<B> Previous:</B> <A NAME="tex2html244"
HREF="node10.html">2.3 configure</A>
<B> <A NAME="tex2html252"
HREF="node1.html">Contents</A></B>
<BR>
<BR>
<!--End of Navigation Panel-->
<!--Table of Child-Links-->
<A NAME="CHILD_LINKS"><STRONG>Subsections</STRONG></A>
<UL>
<LI><UL>
<LI><A NAME="tex2html255"
HREF="node11.html#SECTION00034010000000000000">2.4.0.1 BLAS and LAPACK</A>
<LI><A NAME="tex2html256"
HREF="node11.html#SECTION00034020000000000000">2.4.0.2 FFT</A>
<LI><A NAME="tex2html257"
HREF="node11.html#SECTION00034030000000000000">2.4.0.3 MPI libraries</A>
<LI><A NAME="tex2html258"
HREF="node11.html#SECTION00034040000000000000">2.4.0.4 Other libraries</A>
<LI><A NAME="tex2html259"
HREF="node11.html#SECTION00034050000000000000">2.4.0.5 If optimized libraries are not found</A>
</UL></UL>
<!--End of Table of Child-Links-->
<HR>
<H2><A NAME="SECTION00034000000000000000"></A>
<A NAME="Sec:Libraries"></A>
<BR>
2.4 Libraries
</H2>
<P>
Q<SMALL>UANTUM </SMALL>ESPRESSO makes use of the following external libraries:
<UL>
<LI>BLAS (<TT>http://www.netlib.org/blas/</TT>) and
</LI>
<LI>LAPACK (<TT>http://www.netlib.org/lapack/</TT>) for linear algebra
</LI>
<LI>FFTW (<TT>http://www.fftw.org/</TT>) for Fast Fourier Transforms
</LI>
</UL>
A copy of the needed routines is provided with the distribution. However,
when available, optimized vendor-specific libraries should be used: this
often yields huge performance gains.
<P>
<H4><A NAME="SECTION00034010000000000000">
2.4.0.1 BLAS and LAPACK</A>
</H4>
Q<SMALL>UANTUM </SMALL>ESPRESSO can use the following architecture-specific replacements for BLAS and LAPACK:
<BR><BLOCKQUOTE>
MKL for Intel Linux PCs
<BR>
ACML for AMD Linux PCs
<BR>
ESSL for IBM machines
<BR>
SCSL for SGI Altix
<BR>
SUNperf for Sun
</BLOCKQUOTE>
If none of these is available, we suggest that you use the optimized ATLAS library: see
<BR><TT>http://math-atlas.sourceforge.net/</TT>. Note that ATLAS is not
a complete replacement for LAPACK: it contains all of the BLAS, plus the
LU code, plus the full storage Cholesky code. Follow the instructions in the
ATLAS distributions to produce a full LAPACK replacement.
<P>
Sergei Lisenkov reported success and good performances with optimized
BLAS by Kazushige Goto. They can be freely downloaded,
but not redistributed. See the "GotoBLAS2" item at
<BR><TT>http://www.tacc.utexas.edu/tacc-projects/</TT>.
<P>
<H4><A NAME="SECTION00034020000000000000">
2.4.0.2 FFT</A>
</H4>
Q<SMALL>UANTUM </SMALL>ESPRESSO has an internal copy of an old FFTW version, and it
can use the following vendor-specific FFT libraries:
<BLOCKQUOTE>
IBM ESSL
<BR>
SGI SCSL
<BR>
SUN sunperf
<BR>
NEC ASL
</BLOCKQUOTE>
<TT>configure</TT> will first search for vendor-specific FFT libraries;
if none is found, it will search for an external FFTW v.3 library;
if none is found, it will fall back to the internal copy of FFTW.
<P>
If you have recent versions (v.10 or later) of MKL installed, you
may use the FFTW3 interface provided with MKL. This can be directly
linked in MKL distributed with v.12 of the Intel compiler. In earlier
versions, only sources are distributed: you have to compile them and
to modify file <TT>make.sys</TT> accordingly
(MKL must be linked <EM>after</EM> the FFTW-MKL interface).
<P>
<H4><A NAME="SECTION00034030000000000000">
2.4.0.3 MPI libraries</A>
</H4>
MPI libraries are usually needed for parallel execution
(unless you are happy with OpenMP multicore parallelization).
In well-configured machines, <TT>configure</TT> should find the appropriate
parallel compiler for you, and this should find the appropriate
libraries. Since often this doesn't
happen, especially on PC clusters, see Sec.<A HREF="node14.html#SubSec:LinuxPCMPI">2.7.6</A>.
<P>
<H4><A NAME="SECTION00034040000000000000">
2.4.0.4 Other libraries</A>
</H4>
Q<SMALL>UANTUM </SMALL>ESPRESSO can use the MASS vector math
library from IBM, if available (only on AIX).
<P>
<H4><A NAME="SECTION00034050000000000000">
2.4.0.5 If optimized libraries are not found</A>
</H4>
The <TT>configure</TT> script attempts to find optimized libraries, but may fail
if they have been installed in non-standard places. You should examine
the final value of <TT>BLAS_LIBS, LAPACK_LIBS, FFT_LIBS, MPI_LIBS</TT> (if needed),
<TT>MASS_LIBS</TT> (IBM only), either in the output of <TT>configure</TT> or in the generated
<TT>make.sys</TT>, to check whether it found all the libraries that you intend to use.
<P>
If some library was not found, you can specify a list of directories to search
in the environment variable <TT>LIBDIRS</TT>,
and rerun <TT>configure</TT>; directories in the
list must be separated by spaces. For example:
<PRE>
./configure LIBDIRS="/opt/intel/mkl70/lib/32 /usr/lib/math"
</PRE>
If this still fails, you may set some or all of the <TT>*_LIBS</TT> variables manually
and retry. For example:
<PRE>
./configure BLAS_LIBS="-L/usr/lib/math -lf77blas -latlas_sse"
</PRE>
Beware that in this case, <TT>configure</TT> will blindly accept the specified value,
and won't do any extra search.
<P>
<HR>
<!--Navigation Panel-->
<A NAME="tex2html253"
HREF="node12.html">
<IMG WIDTH="37" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="next" SRC="next.png"></A>
<A NAME="tex2html249"
HREF="node7.html">
<IMG WIDTH="26" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="up" SRC="up.png"></A>
<A NAME="tex2html243"
HREF="node10.html">
<IMG WIDTH="63" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="previous" SRC="prev.png"></A>
<A NAME="tex2html251"
HREF="node1.html">
<IMG WIDTH="65" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="contents" SRC="contents.png"></A>
<BR>
<B> Next:</B> <A NAME="tex2html254"
HREF="node12.html">2.5 Compilation</A>
<B> Up:</B> <A NAME="tex2html250"
HREF="node7.html">2 Installation</A>
<B> Previous:</B> <A NAME="tex2html244"
HREF="node10.html">2.3 configure</A>
<B> <A NAME="tex2html252"
HREF="node1.html">Contents</A></B>
<!--End of Navigation Panel-->
<ADDRESS>
root
2013-12-16
</ADDRESS>
</BODY>
</HTML>
|