This file is indexed.

/usr/lib/python2.7/dist-packages/pandas/tests/test_algos.py is in python-pandas 0.13.1-2ubuntu2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
from pandas.compat import range

import numpy as np

from pandas.core.api import Series, Categorical
import pandas as pd

import pandas.core.algorithms as algos
import pandas.util.testing as tm

class TestMatch(tm.TestCase):
    _multiprocess_can_split_ = True

    def test_ints(self):
        values = np.array([0, 2, 1])
        to_match = np.array([0, 1, 2, 2, 0, 1, 3, 0])

        result = algos.match(to_match, values)
        expected = np.array([0, 2, 1, 1, 0, 2, -1, 0])
        self.assert_(np.array_equal(result, expected))

        result = Series(algos.match(to_match, values, np.nan))
        expected = Series(np.array([0, 2, 1, 1, 0, 2, np.nan, 0]))
        tm.assert_series_equal(result,expected)

        s = pd.Series(np.arange(5),dtype=np.float32)
        result = algos.match(s, [2,4])
        expected = np.array([-1, -1, 0, -1, 1])
        self.assert_(np.array_equal(result, expected))

        result = Series(algos.match(s, [2,4], np.nan))
        expected = Series(np.array([np.nan, np.nan, 0, np.nan, 1]))
        tm.assert_series_equal(result,expected)

    def test_strings(self):
        values = ['foo', 'bar', 'baz']
        to_match = ['bar', 'foo', 'qux', 'foo', 'bar', 'baz', 'qux']

        result = algos.match(to_match, values)
        expected = np.array([1, 0, -1, 0, 1, 2, -1])
        self.assert_(np.array_equal(result, expected))

        result = Series(algos.match(to_match, values, np.nan))
        expected = Series(np.array([1, 0, np.nan, 0, 1, 2, np.nan]))
        tm.assert_series_equal(result,expected)

class TestFactorize(tm.TestCase):
    _multiprocess_can_split_ = True

    def test_basic(self):

        labels, uniques = algos.factorize(['a', 'b', 'b', 'a',
                                           'a', 'c', 'c', 'c'])
        self.assert_(np.array_equal(labels, np.array([ 0, 1, 1, 0, 0, 2, 2, 2],dtype=np.int64)))
        self.assert_(np.array_equal(uniques, np.array(['a','b','c'], dtype=object)))

        labels, uniques = algos.factorize(['a', 'b', 'b', 'a',
                                           'a', 'c', 'c', 'c'], sort=True)
        self.assert_(np.array_equal(labels, np.array([ 0, 1, 1, 0, 0, 2, 2, 2],dtype=np.int64)))
        self.assert_(np.array_equal(uniques, np.array(['a','b','c'], dtype=object)))

        labels, uniques = algos.factorize(list(reversed(range(5))))
        self.assert_(np.array_equal(labels, np.array([0, 1, 2, 3, 4], dtype=np.int64)))
        self.assert_(np.array_equal(uniques, np.array([ 4, 3, 2, 1, 0],dtype=np.int64)))

        labels, uniques = algos.factorize(list(reversed(range(5))), sort=True)
        self.assert_(np.array_equal(labels, np.array([ 4, 3, 2, 1, 0],dtype=np.int64)))
        self.assert_(np.array_equal(uniques, np.array([0, 1, 2, 3, 4], dtype=np.int64)))

        labels, uniques = algos.factorize(list(reversed(np.arange(5.))))
        self.assert_(np.array_equal(labels, np.array([0., 1., 2., 3., 4.], dtype=np.float64)))
        self.assert_(np.array_equal(uniques, np.array([ 4, 3, 2, 1, 0],dtype=np.int64)))

        labels, uniques = algos.factorize(list(reversed(np.arange(5.))), sort=True)
        self.assert_(np.array_equal(labels, np.array([ 4, 3, 2, 1, 0],dtype=np.int64)))
        self.assert_(np.array_equal(uniques, np.array([0., 1., 2., 3., 4.], dtype=np.float64)))

    def test_mixed(self):

        # doc example reshaping.rst
        x = Series(['A', 'A', np.nan, 'B', 3.14, np.inf])
        labels, uniques = algos.factorize(x)

        self.assert_(np.array_equal(labels, np.array([ 0,  0, -1,  1,  2,  3],dtype=np.int64)))
        self.assert_(np.array_equal(uniques, np.array(['A', 'B', 3.14, np.inf], dtype=object)))

        labels, uniques = algos.factorize(x, sort=True)
        self.assert_(np.array_equal(labels, np.array([ 2,  2, -1,  3,  0,  1],dtype=np.int64)))
        self.assert_(np.array_equal(uniques, np.array([3.14, np.inf, 'A', 'B'], dtype=object)))

    def test_datelike(self):

        # M8
        v1 = pd.Timestamp('20130101 09:00:00.00004')
        v2 = pd.Timestamp('20130101')
        x = Series([v1,v1,v1,v2,v2,v1])
        labels, uniques = algos.factorize(x)
        self.assert_(np.array_equal(labels, np.array([ 0,0,0,1,1,0],dtype=np.int64)))
        self.assert_(np.array_equal(uniques, np.array([v1.value,v2.value],dtype='M8[ns]')))

        labels, uniques = algos.factorize(x, sort=True)
        self.assert_(np.array_equal(labels, np.array([ 1,1,1,0,0,1],dtype=np.int64)))
        self.assert_(np.array_equal(uniques, np.array([v2.value,v1.value],dtype='M8[ns]')))

        # period
        v1 = pd.Period('201302',freq='M')
        v2 = pd.Period('201303',freq='M')
        x = Series([v1,v1,v1,v2,v2,v1])

        # periods are not 'sorted' as they are converted back into an index
        labels, uniques = algos.factorize(x)
        self.assert_(np.array_equal(labels, np.array([ 0,0,0,1,1,0],dtype=np.int64)))
        self.assert_(np.array_equal(uniques, np.array([v1, v2],dtype=object)))

        labels, uniques = algos.factorize(x,sort=True)
        self.assert_(np.array_equal(labels, np.array([ 0,0,0,1,1,0],dtype=np.int64)))
        self.assert_(np.array_equal(uniques, np.array([v1, v2],dtype=object)))

class TestUnique(tm.TestCase):
    _multiprocess_can_split_ = True

    def test_ints(self):
        arr = np.random.randint(0, 100, size=50)

        result = algos.unique(arr)
        tm.assert_isinstance(result, np.ndarray)

    def test_objects(self):
        arr = np.random.randint(0, 100, size=50).astype('O')

        result = algos.unique(arr)
        tm.assert_isinstance(result, np.ndarray)

    def test_object_refcount_bug(self):
        lst = ['A', 'B', 'C', 'D', 'E']
        for i in range(1000):
            len(algos.unique(lst))

    def test_on_index_object(self):
        mindex = pd.MultiIndex.from_arrays([np.arange(5).repeat(5),
                                            np.tile(np.arange(5), 5)])
        mindex = mindex.repeat(2)

        result = pd.unique(mindex)
        result.sort()

        expected = mindex.values
        expected.sort()

        tm.assert_almost_equal(result, expected)

class TestValueCounts(tm.TestCase):
    _multiprocess_can_split_ = True

    def test_value_counts(self):
        from pandas.tools.tile import cut

        arr = np.random.randn(4)
        factor = cut(arr, 4)

        tm.assert_isinstance(factor, Categorical)

        result = algos.value_counts(factor)
        expected = algos.value_counts(np.asarray(factor))
        tm.assert_series_equal(result, expected)

    def test_value_counts_bins(self):
        s = [1, 2, 3, 4]
        result = algos.value_counts(s, bins=1)
        self.assertEqual(result.tolist(), [4])
        self.assertEqual(result.index[0], 0.997)

        result = algos.value_counts(s, bins=2, sort=False)
        self.assertEqual(result.tolist(), [2, 2])
        self.assertEqual(result.index[0], 0.997)
        self.assertEqual(result.index[1], 2.5)

    def test_value_counts_dtypes(self):
        result = algos.value_counts([1, 1.])
        self.assertEqual(len(result), 1)

        result = algos.value_counts([1, 1.], bins=1)
        self.assertEqual(len(result), 1)

        result = algos.value_counts(Series([1, 1., '1']))  # object
        self.assertEqual(len(result), 2)

        self.assertRaises(TypeError, lambda s: algos.value_counts(s, bins=1), ['1', 1])


def test_quantile():
    s = Series(np.random.randn(100))

    result = algos.quantile(s, [0, .25, .5, .75, 1.])
    expected = algos.quantile(s.values, [0, .25, .5, .75, 1.])
    tm.assert_almost_equal(result, expected)

if __name__ == '__main__':
    import nose
    nose.runmodule(argv=[__file__, '-vvs', '-x', '--pdb', '--pdb-failure'],
                   exit=False)