neobio 0.0.20030929-1.1 in ubuntu - trusty / universe

About

This package is 435.8 KB. It is available at http://archive.ubuntu.com/ubuntu/pool/universe/n/neobio/neobio_0.0.20030929-1.1_all.deb .

View its full control file here: debian/control.

Description

computes alignments of amino acid and nucleotide sequences

Relations

This package depends on: default-jre | java6-runtime, java-wrappers.

This package does not recommend any other package.

This package suggests: strap.

This package does not conflict with any other package.

Package Contents

This package is indexed.

neobio 0.0.20030929-1.1 is in ubuntu - trusty / universe. This package's architecture is: architectureless.

File Mime Type Owner Mode Size
postinst text/x-shellscript N/A N/A 185 bytes
postrm text/x-shellscript N/A N/A 160 bytes
/usr/ root:root 0o755
/usr/bin/ root:root 0o755
/usr/bin/neobio text/x-shellscript root:root 0o755 154 bytes
/usr/lib/ root:root 0o755
/usr/lib/neobio/ root:root 0o755
/usr/lib/neobio/data/ root:root 0o755
/usr/lib/neobio/data/blosum45.txt text/plain root:root 0o644 2.1 KB
/usr/lib/neobio/data/blosum62.txt text/plain root:root 0o644 2.1 KB
/usr/lib/neobio/data/blosum80.txt text/plain root:root 0o644 2.1 KB
/usr/lib/neobio/data/dna01a.txt text/plain root:root 0o644 76 bytes
/usr/lib/neobio/data/dna01b.txt text/plain root:root 0o644 75 bytes
/usr/lib/neobio/data/dna02a.txt text/plain root:root 0o644 73 bytes
/usr/lib/neobio/data/dna02b.txt text/plain root:root 0o644 72 bytes
/usr/lib/neobio/data/dna03a.txt text/plain root:root 0o644 13 bytes
/usr/lib/neobio/data/dna03b.txt text/plain root:root 0o644 14 bytes
/usr/lib/neobio/data/dna04a.txt text/plain root:root 0o644 77 bytes
/usr/lib/neobio/data/dna04b.txt text/plain root:root 0o644 77 bytes
/usr/lib/neobio/data/dna05a.txt text/plain root:root 0o644 82 bytes
/usr/lib/neobio/data/dna05b.txt text/plain root:root 0o644 87 bytes
/usr/lib/neobio/data/dna06a.txt text/plain root:root 0o644 84 bytes
/usr/lib/neobio/data/dna06b.txt text/plain root:root 0o644 91 bytes
/usr/lib/neobio/data/dna07a.txt text/plain root:root 0o644 87 bytes
/usr/lib/neobio/data/dna07b.txt text/plain root:root 0o644 94 bytes
/usr/lib/neobio/data/dna08a.txt text/plain root:root 0o644 128 bytes
/usr/lib/neobio/data/dna08b.txt text/plain root:root 0o644 128 bytes
/usr/lib/neobio/data/dna09a.txt text/plain root:root 0o644 387 bytes
/usr/lib/neobio/data/dna09b.txt text/plain root:root 0o644 387 bytes
/usr/lib/neobio/data/dna10a.txt text/plain root:root 0o644 1.7 KB
/usr/lib/neobio/data/dna10b.txt text/plain root:root 0o644 1.7 KB
/usr/lib/neobio/data/dna11a.txt text/plain root:root 0o644 2.1 KB
/usr/lib/neobio/data/dna11b.txt text/plain root:root 0o644 2.1 KB
/usr/lib/neobio/data/dna12a.txt text/plain root:root 0o644 600 bytes
/usr/lib/neobio/data/dna12b.txt text/plain root:root 0o644 600 bytes
/usr/lib/neobio/data/dna13a.txt text/plain root:root 0o644 1000 bytes
/usr/lib/neobio/data/dna13b.txt text/plain root:root 0o644 900 bytes
/usr/lib/neobio/data/dna14a.txt text/plain root:root 0o644 1.7 KB
/usr/lib/neobio/data/dna14b.txt text/plain root:root 0o644 2.0 KB
/usr/lib/neobio/data/dna15a.txt text/plain root:root 0o644 3.9 KB
/usr/lib/neobio/data/dna15b.txt text/plain root:root 0o644 3.5 KB
/usr/lib/neobio/data/dna16a.txt text/plain root:root 0o644 3.0 KB
/usr/lib/neobio/data/dna16b.txt text/plain root:root 0o644 3.9 KB
/usr/lib/neobio/data/dna17a.txt text/plain root:root 0o644 4.1 KB
/usr/lib/neobio/data/dna17b.txt text/plain root:root 0o644 4.1 KB
/usr/lib/neobio/data/dna18a.txt text/plain root:root 0o644 10.6 KB
/usr/lib/neobio/data/dna18b.txt text/plain root:root 0o644 10.6 KB
/usr/lib/neobio/data/dna19a.txt text/plain root:root 0o644 898 bytes
/usr/lib/neobio/data/dna19b.txt text/plain root:root 0o644 898 bytes
/usr/lib/neobio/data/dna20a.txt text/plain root:root 0o644 4.9 KB
/usr/lib/neobio/data/dna20b.txt text/plain root:root 0o644 4.9 KB
/usr/lib/neobio/data/dna21a.txt text/plain root:root 0o644 172 bytes
/usr/lib/neobio/data/dna21b.txt text/plain root:root 0o644 195 bytes
/usr/lib/neobio/data/dna22a.txt text/plain root:root 0o644 115 bytes
/usr/lib/neobio/data/dna22b.txt text/plain root:root 0o644 115 bytes
/usr/lib/neobio/data/dna23a.txt text/plain root:root 0o644 10.2 KB
/usr/lib/neobio/data/dna23b.txt text/plain root:root 0o644 10.2 KB
/usr/lib/neobio/data/dna24a.txt text/plain root:root 0o644 73 bytes
/usr/lib/neobio/data/dna24b.txt text/plain root:root 0o644 73 bytes
/usr/lib/neobio/data/dna25a.txt text/plain root:root 0o644 70 bytes
/usr/lib/neobio/data/dna25b.txt text/plain root:root 0o644 70 bytes
/usr/lib/neobio/data/dna26a.txt text/plain root:root 0o644 10 bytes
/usr/lib/neobio/data/dna26b.txt text/plain root:root 0o644 10 bytes
/usr/lib/neobio/data/dna27a.txt text/plain root:root 0o644 10 bytes
/usr/lib/neobio/data/dna27b.txt text/plain root:root 0o644 12 bytes
/usr/lib/neobio/data/dna28a.txt text/plain root:root 0o644 10 bytes
/usr/lib/neobio/data/dna28b.txt text/plain root:root 0o644 10 bytes
/usr/lib/neobio/data/dna29a.txt text/plain root:root 0o644 12 bytes
/usr/lib/neobio/data/dna29b.txt text/plain root:root 0o644 10 bytes
/usr/lib/neobio/data/dna30a.txt text/plain root:root 0o644 12 bytes
/usr/lib/neobio/data/dna30b.txt text/plain root:root 0o644 10 bytes
/usr/lib/neobio/data/dna31a.txt text/plain root:root 0o644 5.8 KB
/usr/lib/neobio/data/dna31b.txt text/plain root:root 0o644 5.8 KB
/usr/lib/neobio/data/dna32a.txt text/plain root:root 0o644 3.9 KB
/usr/lib/neobio/data/dna32b.txt text/plain root:root 0o644 3.9 KB
/usr/lib/neobio/data/dna38a.txt text/plain root:root 0o644 12 bytes
/usr/lib/neobio/data/dna38b.txt text/plain root:root 0o644 12 bytes
/usr/lib/neobio/data/dna39a.txt text/plain root:root 0o644 12 bytes
/usr/lib/neobio/data/dna39b.txt text/plain root:root 0o644 12 bytes
/usr/lib/neobio/data/dnamatrix.txt text/plain root:root 0o644 113 bytes
/usr/lib/neobio/data/hepatitis_a.txt text/plain root:root 0o644 7.5 KB
/usr/lib/neobio/data/hepatitis_b.txt text/plain root:root 0o644 3.2 KB
/usr/lib/neobio/data/hep.html text/plain root:root 0o644 1.8 KB
/usr/lib/neobio/data/hep.txt text/plain root:root 0o644 1.9 KB
/usr/lib/neobio/data/human_chromosome_y.txt text/plain root:root 0o644 97.4 KB
/usr/lib/neobio/data/pam250.txt text/plain root:root 0o644 2.6 KB
/usr/lib/neobio/data/pam30.txt text/plain root:root 0o644 2.6 KB
/usr/lib/neobio/data/pam70.txt text/plain root:root 0o644 2.6 KB
/usr/lib/neobio/data/prot01a.txt text/plain root:root 0o644 16 bytes
/usr/lib/neobio/data/prot01b.txt text/plain root:root 0o644 15 bytes
/usr/lib/neobio/data/prot02a.txt text/plain root:root 0o644 24 bytes
/usr/lib/neobio/data/prot02b.txt text/plain root:root 0o644 23 bytes
/usr/lib/neobio/data/prot03a.txt text/plain root:root 0o644 129 bytes
/usr/lib/neobio/data/prot03b.txt text/plain root:root 0o644 131 bytes
/usr/lib/neobio/data/prot04a.txt text/plain root:root 0o644 219 bytes
/usr/lib/neobio/data/prot04b.txt text/plain root:root 0o644 219 bytes
/usr/lib/neobio/data/prot05a.txt text/plain root:root 0o644 553 bytes
/usr/lib/neobio/data/prot05b.txt text/plain root:root 0o644 554 bytes
/usr/lib/neobio/data/prot06a.txt text/plain root:root 0o644 600 bytes
/usr/lib/neobio/data/prot06b.txt text/plain root:root 0o644 600 bytes
/usr/lib/neobio/data/prot07a.txt text/plain root:root 0o644 1000 bytes
/usr/lib/neobio/data/prot07b.txt text/plain root:root 0o644 900 bytes
/usr/lib/neobio/data/prot08a.txt text/plain root:root 0o644 1.7 KB
/usr/lib/neobio/data/prot08b.txt text/plain root:root 0o644 2.0 KB
/usr/lib/neobio/data/prot09a.txt text/plain root:root 0o644 3.9 KB
/usr/lib/neobio/data/prot09b.txt text/plain root:root 0o644 3.5 KB
/usr/lib/neobio/data/prot10a.txt text/plain root:root 0o644 3.0 KB
/usr/lib/neobio/data/prot10b.txt text/plain root:root 0o644 3.9 KB
/usr/lib/neobio/data/prot11a.txt text/plain root:root 0o644 4.2 KB
/usr/lib/neobio/data/prot11b.txt text/plain root:root 0o644 4.2 KB
/usr/lib/neobio/data/prot12a.txt text/plain root:root 0o644 5.6 KB
/usr/lib/neobio/data/prot12b.txt text/plain root:root 0o644 5.6 KB
/usr/lib/neobio/data/prot13a.txt text/plain root:root 0o644 9.8 KB
/usr/lib/neobio/data/prot13b.txt text/plain root:root 0o644 9.8 KB
/usr/lib/neobio/data/prot14a.txt text/plain root:root 0o644 128 bytes
/usr/lib/neobio/data/prot14b.txt text/plain root:root 0o644 124 bytes
/usr/lib/neobio/data/rat_chromosome_20.txt text/plain root:root 0o644 165.0 KB
/usr/share/ root:root 0o755
/usr/share/applications/ root:root 0o755
/usr/share/applications/neobio.desktop text/plain root:root 0o644 182 bytes
/usr/share/doc/ root:root 0o755
/usr/share/doc-base/ root:root 0o755
/usr/share/doc-base/neobio text/plain root:root 0o644 346 bytes
/usr/share/doc/neobio/ root:root 0o755
/usr/share/doc/neobio/changelog.Debian.gz application/gzip root:root 0o644 479 bytes
/usr/share/doc/neobio/copyright text/plain root:root 0o644 2.0 KB
/usr/share/doc/neobio/html/ root:root 0o755
/usr/share/doc/neobio/html/allclasses-frame.html text/html root:root 0o644 3.4 KB
/usr/share/doc/neobio/html/allclasses-noframe.html text/html root:root 0o644 3.1 KB
/usr/share/doc/neobio/html/constant-values.html text/html root:root 0o644 14.3 KB
/usr/share/doc/neobio/html/help-doc.html text/html root:root 0o644 8.6 KB
/usr/share/doc/neobio/html/index-all.html text/html root:root 0o644 115.1 KB
/usr/share/doc/neobio/html/index.html text/html root:root 0o644 761 bytes
/usr/share/doc/neobio/html/neobio/ root:root 0o755
/usr/share/doc/neobio/html/neobio/alignment/ root:root 0o755
/usr/share/doc/neobio/html/neobio/alignment/AlignmentBlock.html text/html root:root 0o644 17.9 KB
/usr/share/doc/neobio/html/neobio/alignment/BasicScoringScheme.html text/html root:root 0o644 24.5 KB
/usr/share/doc/neobio/html/neobio/alignment/CharSequence.html text/html root:root 0o644 16.2 KB
/usr/share/doc/neobio/html/neobio/alignment/CrochemoreLandauZivUkelsonGlobalAlignment.html text/html root:root 0o644 35.0 KB
/usr/share/doc/neobio/html/neobio/alignment/CrochemoreLandauZivUkelson.html text/html root:root 0o644 68.1 KB
/usr/share/doc/neobio/html/neobio/alignment/CrochemoreLandauZivUkelsonLocalAlignment.html text/html root:root 0o644 49.9 KB
/usr/share/doc/neobio/html/neobio/alignment/Factor.html text/html root:root 0o644 23.1 KB
/usr/share/doc/neobio/html/neobio/alignment/FactorSequence.html text/html root:root 0o644 20.9 KB
/usr/share/doc/neobio/html/neobio/alignment/IncompatibleScoringSchemeException.html text/html root:root 0o644 14.7 KB
/usr/share/doc/neobio/html/neobio/alignment/InvalidScoringMatrixException.html text/html root:root 0o644 14.6 KB
/usr/share/doc/neobio/html/neobio/alignment/InvalidSequenceException.html text/html root:root 0o644 14.4 KB
/usr/share/doc/neobio/html/neobio/alignment/LocalAlignmentBlock.html text/html root:root 0o644 18.8 KB
/usr/share/doc/neobio/html/neobio/alignment/Matrix.html text/html root:root 0o644 10.3 KB
/usr/share/doc/neobio/html/neobio/alignment/NeedlemanWunsch.html text/html root:root 0o644 28.5 KB
/usr/share/doc/neobio/html/neobio/alignment/OutMatrix.html text/html root:root 0o644 20.7 KB
/usr/share/doc/neobio/html/neobio/alignment/package-frame.html text/html root:root 0o644 3.0 KB
/usr/share/doc/neobio/html/neobio/alignment/package-summary.html text/html root:root 0o644 14.7 KB
/usr/share/doc/neobio/html/neobio/alignment/package-tree.html text/html root:root 0o644 9.1 KB
/usr/share/doc/neobio/html/neobio/alignment/PairwiseAlignmentAlgorithm.html text/html root:root 0o644 46.6 KB
/usr/share/doc/neobio/html/neobio/alignment/PairwiseAlignment.html text/html root:root 0o644 22.8 KB
/usr/share/doc/neobio/html/neobio/alignment/ScoringMatrix.html text/html root:root 0o644 28.9 KB
/usr/share/doc/neobio/html/neobio/alignment/ScoringScheme.html text/html root:root 0o644 19.7 KB
/usr/share/doc/neobio/html/neobio/alignment/Smawk.html text/html root:root 0o644 35.6 KB
/usr/share/doc/neobio/html/neobio/alignment/SmithWaterman.html text/html root:root 0o644 29.9 KB
/usr/share/doc/neobio/html/neobio/alignment/Trie.html text/html root:root 0o644 24.3 KB
/usr/share/doc/neobio/html/neobio/gui/ root:root 0o755
/usr/share/doc/neobio/html/neobio/gui/AboutDialog.html text/html root:root 0o644 23.9 KB
/usr/share/doc/neobio/html/neobio/gui/NeoBio.html text/html root:root 0o644 33.7 KB
/usr/share/doc/neobio/html/neobio/gui/package-frame.html text/html root:root 0o644 1019 bytes
/usr/share/doc/neobio/html/neobio/gui/package-summary.html text/html root:root 0o644 7.4 KB
/usr/share/doc/neobio/html/neobio/gui/package-tree.html text/html root:root 0o644 7.5 KB
/usr/share/doc/neobio/html/neobio/gui/PairwiseAlignmentFrame.html text/html root:root 0o644 54.4 KB
/usr/share/doc/neobio/html/neobio/textui/ root:root 0o755
/usr/share/doc/neobio/html/neobio/textui/NeoBio.html text/html root:root 0o644 12.2 KB
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/usr/share/doc/neobio/html/neobio/textui/package-tree.html text/html root:root 0o644 6.4 KB
/usr/share/doc/neobio/html/neobio/textui/RandomFactorSequenceGenerator.html text/html root:root 0o644 13.6 KB
/usr/share/doc/neobio/html/neobio/textui/RandomSequenceGenerator.html text/html root:root 0o644 13.3 KB
/usr/share/doc/neobio/html/overview-frame.html text/html root:root 0o644 1.2 KB
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/usr/share/doc/neobio/html/packages.html text/html root:root 0o644 778 bytes
/usr/share/doc/neobio/html/serialized-form.html text/html root:root 0o644 15.9 KB
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/usr/share/doc/neobio/html/src-html/neobio/alignment/AlignmentBlock.html text/html root:root 0o644 11.7 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/BasicScoringScheme.html text/html root:root 0o644 19.4 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/CharSequence.html text/html root:root 0o644 14.6 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/CrochemoreLandauZivUkelsonGlobalAlignment.html text/html root:root 0o644 35.8 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/CrochemoreLandauZivUkelson.html text/html root:root 0o644 78.9 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/CrochemoreLandauZivUkelsonLocalAlignment.html text/html root:root 0o644 70.2 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/Factor.html text/html root:root 0o644 19.9 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/FactorSequence.html text/html root:root 0o644 27.8 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/IncompatibleScoringSchemeException.html text/html root:root 0o644 7.7 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/InvalidScoringMatrixException.html text/html root:root 0o644 7.6 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/InvalidSequenceException.html text/html root:root 0o644 7.7 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/LocalAlignmentBlock.html text/html root:root 0o644 10.7 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/Matrix.html text/html root:root 0o644 5.9 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/NeedlemanWunsch.html text/html root:root 0o644 36.1 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/OutMatrix.html text/html root:root 0o644 16.4 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/PairwiseAlignmentAlgorithm.html text/html root:root 0o644 45.7 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/PairwiseAlignment.html text/html root:root 0o644 21.1 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/ScoringMatrix.html text/html root:root 0o644 40.4 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/ScoringScheme.html text/html root:root 0o644 13.5 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/Smawk.html text/html root:root 0o644 56.0 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/SmithWaterman.html text/html root:root 0o644 38.6 KB
/usr/share/doc/neobio/html/src-html/neobio/alignment/Trie.html text/html root:root 0o644 29.4 KB
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/usr/share/doc/neobio/html/src-html/neobio/gui/AboutDialog.html text/html root:root 0o644 7.6 KB
/usr/share/doc/neobio/html/src-html/neobio/gui/NeoBio.html text/html root:root 0o644 19.4 KB
/usr/share/doc/neobio/html/src-html/neobio/gui/PairwiseAlignmentFrame.html text/html root:root 0o644 69.9 KB
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/usr/share/doc/neobio/html/src-html/neobio/textui/RandomFactorSequenceGenerator.html text/html root:root 0o644 21.6 KB
/usr/share/doc/neobio/html/src-html/neobio/textui/RandomSequenceGenerator.html text/html root:root 0o644 18.6 KB
/usr/share/doc/neobio/html/stylesheet.css text/plain root:root 0o644 1.3 KB
/usr/share/java/ root:root 0o755
/usr/share/java/neobio-0.0.20030929.1-0.0.20030929.jar application/java-archive root:root 0o644 102.5 KB
/usr/share/java/neobio-0.0.20030929.1.jar root:root 0o777
/usr/share/man/ root:root 0o755
/usr/share/man/man1/ root:root 0o755
/usr/share/man/man1/neobio.1.gz application/gzip root:root 0o644 508 bytes
/usr/share/menu/ root:root 0o755
/usr/share/menu/neobio text/plain root:root 0o644 242 bytes

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