/usr/share/ncbi/data/featdef.prt is in ncbi-data 6.1.20120620-7.
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--
-- featdef.prt
--
-- Definitions for feature display attributes
-- J.Ostell - 1994
--
--*********************************************************************
FeatDefGroupSet ::= {
groups {
{
groupkey 0 ,
groupname "Unrecognized Features"
} ,
{
groupkey 1 ,
groupname "Genes and Named Regions",
} ,
{
groupkey 2 ,
groupname "Coding Regions and Transcripts",
} ,
{
groupkey 3 ,
groupname "Structural RNAs",
} ,
{
groupkey 4 ,
groupname "Bibliographic and Comments",
} ,
{
groupkey 5 ,
groupname "Sites and Bonds",
}
} ,
defs {
{ -- Unrecognized, unsupported feature
typelabel "???" ,
menulabel "Unsupported feature" ,
featdef-key 0 ,
seqfeat-key 0 ,
entrygroup 0 ,
displaygroup 0 ,
molgroup both
} ,
{ -- Gene
typelabel "Gene" ,
menulabel "Gene" ,
featdef-key 1 ,
seqfeat-key 1 ,
entrygroup 1 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Org
typelabel "Org" ,
menulabel "Organism" ,
featdef-key 2 ,
seqfeat-key 2 ,
entrygroup 4 ,
displaygroup 4 ,
molgroup both
} ,
{ -- CdRegion
typelabel "CDS" ,
menulabel "Coding Region" ,
featdef-key 3 ,
seqfeat-key 3 ,
entrygroup 2 ,
displaygroup 2 ,
molgroup na
} ,
{ -- Prot
typelabel "Prot" ,
menulabel "Protein Names" ,
featdef-key 4 ,
seqfeat-key 4 ,
entrygroup 1 ,
displaygroup 1 ,
molgroup aa
} ,
{ -- precursor RNA
typelabel "preRNA" ,
menulabel "Precursor RNA" ,
featdef-key 5 ,
seqfeat-key 5 ,
entrygroup 2 ,
displaygroup 2 ,
molgroup na
} ,
{ -- mRNA
typelabel "mRNA" ,
menulabel "Mature Messenger RNA" ,
featdef-key 6 ,
seqfeat-key 5 ,
entrygroup 2 ,
displaygroup 2 ,
molgroup na
} ,
{ -- tRNA
typelabel "tRNA" ,
menulabel "Transfer RNA" ,
featdef-key 7 ,
seqfeat-key 5 ,
entrygroup 3 ,
displaygroup 3 ,
molgroup na
} ,
{ -- rRNA
typelabel "rRNA" ,
menulabel "Ribosomal RNA" ,
featdef-key 8 ,
seqfeat-key 5 ,
entrygroup 3 ,
displaygroup 3 ,
molgroup na
} ,
{ -- snRNA
typelabel "snRNA" ,
menulabel "Small Nuclear RNA" ,
featdef-key 9 ,
seqfeat-key 5 ,
entrygroup 0 ,
displaygroup 3 ,
molgroup na
} ,
{ -- scRNA
typelabel "scRNA" ,
menulabel "Small Cytoplasmic RNA" ,
featdef-key 10 ,
seqfeat-key 5 ,
entrygroup 0 ,
displaygroup 3 ,
molgroup na
} ,
{ -- other RNA
typelabel "RNA" ,
menulabel "Other Types of RNA" ,
featdef-key 11 ,
seqfeat-key 5 ,
entrygroup 3 ,
displaygroup 3 ,
molgroup na
} ,
{ -- Pub
typelabel "Cit" ,
menulabel "Bibliographic Citations" ,
featdef-key 12 ,
seqfeat-key 6 ,
entrygroup 4 ,
displaygroup 4 ,
molgroup both
} ,
{ -- seq
typelabel "Xref" ,
menulabel "Reference to Another Sequence" ,
featdef-key 13 ,
seqfeat-key 7 ,
entrygroup 4 ,
displaygroup 4 ,
molgroup both
} ,
{ -- unclassified impfeat
typelabel "Import" ,
menulabel "Unclassified ImpFeat" ,
featdef-key 14 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 0 ,
molgroup na
} ,
{ -- Imp
typelabel "allele" ,
menulabel "Allelic Varient" ,
featdef-key 15 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "attenuator" ,
menulabel "Attenuator" ,
featdef-key 16 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 5 ,
molgroup na
} ,
{ -- Imp
typelabel "C_region" ,
menulabel "Immunoglobin/T-cell receptor constant region" ,
featdef-key 17 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "CAAT_signal" ,
menulabel "CAAT box" ,
featdef-key 18 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "CDS" ,
menulabel "Untranslatable coding region" ,
featdef-key 19 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 4 ,
molgroup na
} ,
{ -- Imp
typelabel "conflict" ,
menulabel "Sequence determinations differ" ,
featdef-key 20 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 4 ,
molgroup na
} ,
{ -- Imp
typelabel "D-loop" ,
menulabel "Displacement Loop" ,
featdef-key 21 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "D_segment" ,
menulabel "Diversity Segment of Immunoglobin" ,
featdef-key 22 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "enhancer" ,
menulabel "Enhancer" ,
featdef-key 23 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 5 ,
molgroup na
} ,
{ -- Imp
typelabel "exon" ,
menulabel "Exon" ,
featdef-key 24 ,
seqfeat-key 8 ,
entrygroup 2 ,
displaygroup 2 ,
molgroup na
} ,
{ -- Imp
typelabel "GC_signal" ,
menulabel "GC box" ,
featdef-key 25 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "iDNA" ,
menulabel "intervening DNA" ,
featdef-key 26 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "intron" ,
menulabel "Intron" ,
featdef-key 27 ,
seqfeat-key 8 ,
entrygroup 2 ,
displaygroup 2 ,
molgroup na
} ,
{ -- Imp
typelabel "J_segment" ,
menulabel "IG joining segment" ,
featdef-key 28 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "LTR" ,
menulabel "Long Terminal Repeat" ,
featdef-key 29 ,
seqfeat-key 8 ,
entrygroup 1 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "mat_peptide" ,
menulabel "Mature Peptide labeled on Nuc Acid" ,
featdef-key 30 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 2 ,
molgroup na
} ,
{ -- Imp
typelabel "misc_binding" ,
menulabel "Miscellaneaous binding site" ,
featdef-key 31 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 5 ,
molgroup na
} ,
{ -- Imp
typelabel "misc_difference" ,
menulabel "Miscellaneous sequence difference" ,
featdef-key 32 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 4 ,
molgroup na
} ,
{ -- Imp
typelabel "misc_feature" ,
menulabel "Miscellaneaous feature" ,
featdef-key 33 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 4 ,
molgroup na
} ,
{ -- Imp
typelabel "misc_recomb" ,
menulabel "Miscellaneous recombination" ,
featdef-key 34 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "misc_RNA" ,
menulabel "Miscellaneous RNA" ,
featdef-key 35 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 3 ,
molgroup na
} ,
{ -- Imp
typelabel "misc_signal" ,
menulabel "Miscellaneous signal sequence" ,
featdef-key 36 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 5 ,
molgroup na
} ,
{ -- Imp
typelabel "misc_structure" ,
menulabel "Miscellaneous secondary structure" ,
featdef-key 37 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "modified_base" ,
menulabel "Modified base" ,
featdef-key 38 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 5 ,
molgroup na
} ,
{ -- Imp
typelabel "mutation" ,
menulabel "site of mutation in related strain" ,
featdef-key 39 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 5 ,
molgroup na
} ,
{ -- Imp
typelabel "N_region" ,
menulabel "Extra na in rearranged IG" ,
featdef-key 40 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "old_sequence" ,
menulabel "Location of sequence revision" ,
featdef-key 41 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 4 ,
molgroup na
} ,
{ -- Imp
typelabel "polyA_signal" ,
menulabel "PolyA addition recognition signal" ,
featdef-key 42 ,
seqfeat-key 8 ,
entrygroup 5 ,
displaygroup 5 ,
molgroup na
} ,
{ -- Imp
typelabel "polyA_site" ,
menulabel "Point where polyA tail begins" ,
featdef-key 43 ,
seqfeat-key 8 ,
entrygroup 5 ,
displaygroup 5 ,
molgroup na
} ,
{ -- Imp
typelabel "precursor_RNA" ,
menulabel "RNA which is a post-transcriptional intermediate" ,
featdef-key 44 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 2 ,
molgroup na
} ,
{ -- Imp
typelabel "prim_transcript" ,
menulabel "Primary transcript" ,
featdef-key 45 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 2 ,
molgroup na
} ,
{ -- Imp
typelabel "primer_bind" ,
menulabel "Primer binding site" ,
featdef-key 46 ,
seqfeat-key 8 ,
entrygroup 5 ,
displaygroup 5 ,
molgroup na
} ,
{ -- Imp
typelabel "promoter" ,
menulabel "Promoter" ,
featdef-key 47 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 5 ,
molgroup na
} ,
{ -- Imp
typelabel "protein_bind" ,
menulabel "Protein binding site" ,
featdef-key 48 ,
seqfeat-key 8 ,
entrygroup 5 ,
displaygroup 5 ,
molgroup na
} ,
{ -- Imp
typelabel "RBS" ,
menulabel "Ribosome binding site" ,
featdef-key 49 ,
seqfeat-key 8 ,
entrygroup 5 ,
displaygroup 5 ,
molgroup na
} ,
{ -- Imp
typelabel "repeat_region" ,
menulabel "Region containing repeats" ,
featdef-key 50 ,
seqfeat-key 8 ,
entrygroup 1 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "repeat_unit" ,
menulabel "Single repeat unit" ,
featdef-key 51 ,
seqfeat-key 8 ,
entrygroup 1 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "rep_origin" ,
menulabel "Origin of replication" ,
featdef-key 52 ,
seqfeat-key 8 ,
entrygroup 5 ,
displaygroup 5 ,
molgroup na
} ,
{ -- Imp
typelabel "S_region" ,
menulabel "IG switch region" ,
featdef-key 53 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "satellite" ,
menulabel "satellite repeat region" ,
featdef-key 54 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "sig_peptide" ,
menulabel "Signal Peptide annotated on Nuc Acid" ,
featdef-key 55 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "source" ,
menulabel "Source of Nuc Acid" ,
featdef-key 56 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 4 ,
molgroup na
} ,
{ -- Imp
typelabel "stem_loop" ,
menulabel "Stem loop structure" ,
featdef-key 57 ,
seqfeat-key 8 ,
entrygroup 1 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "STS" ,
menulabel "Sequence tagged site" ,
featdef-key 58 ,
seqfeat-key 8 ,
entrygroup 1 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "TATA_signal" ,
menulabel "TATA box" ,
featdef-key 59 ,
seqfeat-key 8 ,
entrygroup 5 ,
displaygroup 5 ,
molgroup na
} ,
{ -- Imp
typelabel "terminator" ,
menulabel "Transcription terminator" ,
featdef-key 60 ,
seqfeat-key 8 ,
entrygroup 5 ,
displaygroup 5 ,
molgroup na
} ,
{ --
typelabel "transit_peptide" ,
menulabel "Transit peptide annotated on Nuc Acid" ,
featdef-key 61 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "unsure" ,
menulabel "Unsure of exact sequence" ,
featdef-key 62 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 4 ,
molgroup na
} ,
{ -- Imp
typelabel "V_region" ,
menulabel "IG variable region" ,
featdef-key 63 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "V_segment" ,
menulabel "IG variable segment" ,
featdef-key 64 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "variation" ,
menulabel "Strain differences" ,
featdef-key 65 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 4 ,
molgroup na
} ,
{ -- Imp
typelabel "virion" ,
menulabel "Viral genome" ,
featdef-key 66 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 4 ,
molgroup na
} ,
{ -- Imp
typelabel "3'clip" ,
menulabel "3' region of transcript clipped off in processing" ,
featdef-key 67 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "3'UTR" ,
menulabel "3' untranslated region" ,
featdef-key 68 ,
seqfeat-key 8 ,
entrygroup 2 ,
displaygroup 2 ,
molgroup na
} ,
{ -- Imp
typelabel "5'clip" ,
menulabel "5' region of transcript clipped off in processing" ,
featdef-key 69 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 1 ,
molgroup na
} ,
{ -- Imp
typelabel "5'UTR" ,
menulabel "5' untranslated region" ,
featdef-key 70 ,
seqfeat-key 8 ,
entrygroup 2 ,
displaygroup 2 ,
molgroup na
} ,
{ -- Imp
typelabel "-10_signal" ,
menulabel "Pribnow box" ,
featdef-key 71 ,
seqfeat-key 8 ,
entrygroup 5 ,
displaygroup 5 ,
molgroup na
} ,
{ -- Imp
typelabel "-35_signal" ,
menulabel "-35 region of transcription start" ,
featdef-key 72 ,
seqfeat-key 8 ,
entrygroup 5 ,
displaygroup 5 ,
molgroup na
} ,
{ -- Imp
typelabel "Site-ref" ,
menulabel "SITES type reference" ,
featdef-key 73 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 4 ,
molgroup na
} ,
{ -- region
typelabel "Region" ,
menulabel "Named region of sequence" ,
featdef-key 74 ,
seqfeat-key 9 ,
entrygroup 1 ,
displaygroup 1 ,
molgroup both
} ,
{ -- comment
typelabel "Comment" ,
menulabel "Comment associated with sequence" ,
featdef-key 75 ,
seqfeat-key 10 ,
entrygroup 4 ,
displaygroup 4 ,
molgroup both
} ,
{ -- bond
typelabel "Bond" ,
menulabel "Chemical bonds" ,
featdef-key 76 ,
seqfeat-key 11 ,
entrygroup 5 ,
displaygroup 5 ,
molgroup aa
} ,
{ -- site
typelabel "Site" ,
menulabel "Binding/Active Sites" ,
featdef-key 77 ,
seqfeat-key 12 ,
entrygroup 5 ,
displaygroup 5 ,
molgroup both
} ,
{ -- rsite
typelabel "Rsite" ,
menulabel "Restriction Sites" ,
featdef-key 78 ,
seqfeat-key 13 ,
entrygroup 5 ,
displaygroup 5 ,
molgroup na
} ,
{ -- user
typelabel "User" ,
menulabel "User Defined feature" ,
featdef-key 79 ,
seqfeat-key 14 ,
entrygroup 0 ,
displaygroup 4 ,
molgroup both
} ,
{ -- txinit
typelabel "TxInit" ,
menulabel "Transcription Initiation Site" ,
featdef-key 80 ,
seqfeat-key 15 ,
entrygroup 5 ,
displaygroup 5 ,
molgroup na
} ,
{ -- num
typelabel "Num" ,
menulabel "Numbering System for Sequence" ,
featdef-key 81 ,
seqfeat-key 16 ,
entrygroup 4 ,
displaygroup 4 ,
molgroup both
} ,
{ -- psec-str
typelabel "SecStr" ,
menulabel "Protein Secondary Structure" ,
featdef-key 82 ,
seqfeat-key 17 ,
entrygroup 1 ,
displaygroup 1 ,
molgroup aa
} ,
{ -- non-std-residue
typelabel "NonStdRes" ,
menulabel "Non-standard Residue" ,
featdef-key 83 ,
seqfeat-key 18 ,
entrygroup 5 ,
displaygroup 5 ,
molgroup aa
} ,
{ -- het
typelabel "Het" ,
menulabel "Heterogen" ,
featdef-key 84 ,
seqfeat-key 19 ,
entrygroup 5 ,
displaygroup 5 ,
molgroup aa
} ,
{ -- biosrc
typelabel "Src" ,
menulabel "Biological Source" ,
featdef-key 85 ,
seqfeat-key 20 ,
entrygroup 4 ,
displaygroup 4 ,
molgroup both
} ,
{ -- Prot
typelabel "proprotein" ,
menulabel "Proprotein" ,
featdef-key 86 ,
seqfeat-key 4 ,
entrygroup 1 ,
displaygroup 1 ,
molgroup aa
} ,
{ -- Prot
typelabel "mat_peptide" ,
menulabel "Mature Peptide" ,
featdef-key 87 ,
seqfeat-key 4 ,
entrygroup 1 ,
displaygroup 1 ,
molgroup aa
} ,
{ -- Prot
typelabel "sig_peptide" ,
menulabel "Signal Peptide" ,
featdef-key 88 ,
seqfeat-key 4 ,
entrygroup 1 ,
displaygroup 1 ,
molgroup aa
} ,
{ -- Prot
typelabel "transit_peptide" ,
menulabel "Transit Peptide" ,
featdef-key 89 ,
seqfeat-key 4 ,
entrygroup 1 ,
displaygroup 1 ,
molgroup aa
} ,
{ -- snoRNA
typelabel "snoRNA" ,
menulabel "Small Nucleolar RNA" ,
featdef-key 90 ,
seqfeat-key 5 ,
entrygroup 0 ,
displaygroup 3 ,
molgroup na
} ,
{ -- Gap
typelabel "gap" ,
menulabel "Gap" ,
featdef-key 91 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 4 ,
molgroup na
} ,
{ -- Operon
typelabel "operon" ,
menulabel "Operon" ,
featdef-key 92 ,
seqfeat-key 8 ,
entrygroup 1 ,
displaygroup 1 ,
molgroup na
} ,
{ -- OriT
typelabel "oriT" ,
menulabel "Origin of Transcription" ,
featdef-key 93 ,
seqfeat-key 8 ,
entrygroup 5 ,
displaygroup 5 ,
molgroup na
} ,
{ -- ncRNA
typelabel "ncRNA" ,
menulabel "Non-coding RNA" ,
featdef-key 94 ,
seqfeat-key 5 ,
entrygroup 3 ,
displaygroup 3 ,
molgroup na
} ,
{ -- tmRNA
typelabel "tmRNA" ,
menulabel "Transfer-messenger RNA" ,
featdef-key 95 ,
seqfeat-key 5 ,
entrygroup 3 ,
displaygroup 3 ,
molgroup na
} ,
{ -- clone ref
typelabel "CloneRef" ,
menulabel "Clone Reference" ,
featdef-key 96 ,
seqfeat-key 21 ,
entrygroup 0 ,
displaygroup 0 ,
molgroup na
} ,
{ -- variation ref
typelabel "VariationRef" ,
menulabel "Variation Reference" ,
featdef-key 97 ,
seqfeat-key 22 ,
entrygroup 0 ,
displaygroup 0 ,
molgroup na
},
{ -- Imp
typelabel "mobile_element" ,
menulabel "Mobile genetic element" ,
featdef-key 98 ,
seqfeat-key 8 ,
entrygroup 1 ,
displaygroup 1 ,
molgroup na
},
{ -- Imp
typelabel "centromere" ,
menulabel "Centromere" ,
featdef-key 99 ,
seqfeat-key 8 ,
entrygroup 1 ,
displaygroup 1 ,
molgroup na
},
{ -- Imp
typelabel "telomere" ,
menulabel "Telomere" ,
featdef-key 100 ,
seqfeat-key 8 ,
entrygroup 1 ,
displaygroup 1 ,
molgroup na
},
{ -- assembly_gap
typelabel "assembly_gap" ,
menulabel "Assembly Gap" ,
featdef-key 101 ,
seqfeat-key 8 ,
entrygroup 0 ,
displaygroup 4 ,
molgroup na
}
}
}
|