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/usr/bin/gui-compare is in mono-tools-gui 2.11+git20131009.5b1ef35-1build1.

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#!/bin/sh

export DYLD_FALLBACK_LIBRARY_PATH=/Library/Frameworks/Mono.framework/Versions/Current/lib:/usr/lib 

exec mono $MONO_OPTIONS "/usr/lib/gui-compare/gui-compare.exe" "$@"