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/usr/bin/masterha_stop is in mha4mysql-manager 0.55-1.

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#!/usr/bin/env perl

#  Copyright (C) 2011 DeNA Co.,Ltd.
#
#  This program is free software; you can redistribute it and/or modify
#  it under the terms of the GNU General Public License as published by
#  the Free Software Foundation; either version 2 of the License, or
#  (at your option) any later version.
#
#  This program is distributed in the hope that it will be useful,
#  but WITHOUT ANY WARRANTY; without even the implied warranty of
#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
#  GNU General Public License for more details.
#
#  You should have received a copy of the GNU General Public License
#   along with this program; if not, write to the Free Software
#  Foundation, Inc.,
#  51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA

use strict;
use warnings FATAL => 'all';

use Getopt::Long qw(:config pass_through);
use Pod::Usage;
use MHA::ManagerConst;
use MHA::ManagerAdminWrapper;

my $help;
my $version;

$| = 1;

GetOptions(
  'help'    => \$help,
  'version' => \$version,
);

if ($version) {
  print "masterha_stop version $MHA::ManagerConst::VERSION.\n";
  exit 0;
}

if ($help) {
  pod2usage(0);
}

exit MHA::ManagerAdminWrapper::stop_manager(@ARGV);

# ############################################################################
# Documentation
# ############################################################################

=pod

=head1 NAME

masterha_stop - Stopping MHA Manager process

=head1 SYNOPSIS

masterha_stop --conf=/usr/local/masterha/conf/app1.cnf 

See online reference (http://code.google.com/p/mysql-master-ha/wiki/masterha_stop) for details.

=head1 DESCRIPTION

See online reference (http://code.google.com/p/mysql-master-ha/wiki/masterha_stop) for details.