/usr/share/massxpert/pol-seqs/yellow-fluorescent-protein.mxp is in massxpert-data 3.4.1-1.
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The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 | <?xml version="1.0"?>
<!-- DTD for polymer sequences, used by the
'massXpert' mass spectrometry application.
Copyright 2006,2007,2008 Filippo Rusconi - Licensed under the GNU GPL -->
<!DOCTYPE polseqdata [
<!ELEMENT polseqdata (polchemdef_name,name,code,author,datetime,polseq,le_modif,re_modif,crosslinks,prop*)>
<!ATTLIST polseqdata version NMTOKEN #REQUIRED>
<!ELEMENT polchemdef_name (#PCDATA)>
<!ELEMENT mdf (name,formula,targets)>
<!ELEMENT name (#PCDATA)>
<!ELEMENT formula (#PCDATA)>
<!ELEMENT targets (#PCDATA)>
<!ELEMENT code (#PCDATA)>
<!ELEMENT author (#PCDATA)>
<!ELEMENT datetime (#PCDATA)>
<!ELEMENT polseq (codes|monomer)*>
<!ELEMENT le_modif (mdf?)>
<!ELEMENT re_modif (mdf?)>
<!ELEMENT codes (#PCDATA)>
<!ELEMENT crosslink (name,targets)>
<!ELEMENT crosslinks (crosslink*)>
<!ELEMENT monomer (code, mdf*)>
<!ELEMENT prop (name, data+)>
<!ATTLIST data type (str | int | dbl) "str">
<!ELEMENT data (#PCDATA)>
]>
<polseqdata version="5">
<polchemdef_name>protein-1-letter</polchemdef_name>
<name>CFP TEV-cut</name>
<code>NOT_SET</code>
<author>rusconi</author>
<datetime>2009-09-17:56:09</datetime>
<polseq>
<codes>GAVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFGYGLQCFARYPDHMKQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSYQSALSKDPNEKRDHMVLLEFVTAAGITLGMDELYK</codes>
</polseq>
<le_modif>
</le_modif>
<re_modif>
</re_modif>
<crosslinks>
<crosslink>
<name>CFP-chromophore</name>
<targets>;66;67;68;</targets>
<comment></comment>
</crosslink>
</crosslinks>
</polseqdata>
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