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<a href="#pub-methods">Public Member Functions</a>  </div>
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<div class="title">CSegSetWithImages Class Reference<div class="ingroups"><a class="el" href="group__perf.html">Perfusion Analysis</a></div></div>  </div>
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<p>A set of images and its segmentations, related to heart perfusion analysis.  
 <a href="classCSegSetWithImages.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="SegSetWithImages_8hh_source.html">mia/2d/SegSetWithImages.hh</a>&gt;</code></p>
<div class="dynheader">
Inheritance diagram for CSegSetWithImages:</div>
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<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a289796ad6ffa38bd9ad4f8d2934c1bce"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCSegSetWithImages.html">CSegSetWithImages</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSetWithImages.html#a289796ad6ffa38bd9ad4f8d2934c1bce">crop</a> (const <a class="el" href="BoundingBox_8hh.html#af50d64dcb0b6f0ccdb574f923cf55d8a">C2DIVector</a> &amp;start, const <a class="el" href="BoundingBox_8hh.html#af50d64dcb0b6f0ccdb574f923cf55d8a">C2DIVector</a> &amp;end, const std::string &amp;crop_filename_base)</td></tr>
<tr class="separator:a289796ad6ffa38bd9ad4f8d2934c1bce"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aad3c2e0954c0b73293f5c4d0b7ae54e4"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSetWithImages.html#aad3c2e0954c0b73293f5c4d0b7ae54e4">CSegSetWithImages</a> ()</td></tr>
<tr class="separator:aad3c2e0954c0b73293f5c4d0b7ae54e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:afd1c0ae18b826ef7f1684964c6186832"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSetWithImages.html#afd1c0ae18b826ef7f1684964c6186832">CSegSetWithImages</a> (const std::string &amp;filename, bool ignore_path)</td></tr>
<tr class="separator:afd1c0ae18b826ef7f1684964c6186832"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a5c2375dee456ea39ae3d3ba39289b88a"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="2d_2image_8hh.html#a98e18aba33a7a32e91384383348163cf">C2DImageSeries</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSetWithImages.html#a5c2375dee456ea39ae3d3ba39289b88a">get_images</a> () const </td></tr>
<tr class="separator:a5c2375dee456ea39ae3d3ba39289b88a"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aadd81242b81ab6422e4aab4743ea4eb5"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSetWithImages.html#aadd81242b81ab6422e4aab4743ea4eb5">save_images</a> (const std::string &amp;root) const </td></tr>
<tr class="memdesc:aadd81242b81ab6422e4aab4743ea4eb5"><td class="mdescLeft">&#160;</td><td class="mdescRight">save the images to their give file names with the given directory as root  <a href="#aadd81242b81ab6422e4aab4743ea4eb5">More...</a><br/></td></tr>
<tr class="separator:aadd81242b81ab6422e4aab4743ea4eb5"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a480bce6bc06f703462f46e2e3c209df1"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSetWithImages.html#a480bce6bc06f703462f46e2e3c209df1">set_images</a> (const <a class="el" href="2d_2image_8hh.html#a98e18aba33a7a32e91384383348163cf">C2DImageSeries</a> &amp;series)</td></tr>
<tr class="memdesc:a480bce6bc06f703462f46e2e3c209df1"><td class="mdescLeft">&#160;</td><td class="mdescRight">sets the image series  <a href="#a480bce6bc06f703462f46e2e3c209df1">More...</a><br/></td></tr>
<tr class="separator:a480bce6bc06f703462f46e2e3c209df1"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_classCSegSet"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCSegSet')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classCSegSet.html">CSegSet</a></td></tr>
<tr class="memitem:a1ae3735147ea589307264941b60d6b4a inherit pub_methods_classCSegSet"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#a1ae3735147ea589307264941b60d6b4a">add_frame</a> (const <a class="el" href="classCSegFrame.html">CSegFrame</a> &amp;frame)</td></tr>
<tr class="separator:a1ae3735147ea589307264941b60d6b4a inherit pub_methods_classCSegSet"><td class="memSeparator" colspan="2">&#160;</td></tr>
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<tr class="memdesc:a6aa879db6f1b97a415acaf20827834de inherit pub_methods_classCSegSet"><td class="mdescLeft">&#160;</td><td class="mdescRight">Standard constructor.  <a href="#a6aa879db6f1b97a415acaf20827834de">More...</a><br/></td></tr>
<tr class="separator:a6aa879db6f1b97a415acaf20827834de inherit pub_methods_classCSegSet"><td class="memSeparator" colspan="2">&#160;</td></tr>
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<tr class="memitem:aaf59cc2d8712ccc2746bcdffd2bc9362 inherit pub_methods_classCSegSet"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classC2DBoundingBox.html">C2DBoundingBox</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#aaf59cc2d8712ccc2746bcdffd2bc9362">get_boundingbox</a> () const </td></tr>
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<tr class="memitem:a60d1e48d8434c59b4bc843d73e89628a inherit pub_methods_classCSegSet"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classCSegSet.html#a8dbbd2f1864cfc06135e54d3bd359458">Frames</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#a60d1e48d8434c59b4bc843d73e89628a">get_frames</a> () const </td></tr>
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<tr class="memitem:a2b1219c57776687b5dde6073bd447c03 inherit pub_methods_classCSegSet"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCSegSet.html#a8dbbd2f1864cfc06135e54d3bd359458">Frames</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#a2b1219c57776687b5dde6073bd447c03">get_frames</a> ()</td></tr>
<tr class="separator:a2b1219c57776687b5dde6073bd447c03 inherit pub_methods_classCSegSet"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ab4b9b609d12ed1e3982fc1175dd79286 inherit pub_methods_classCSegSet"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#ab4b9b609d12ed1e3982fc1175dd79286">get_LV_peak</a> () const </td></tr>
<tr class="separator:ab4b9b609d12ed1e3982fc1175dd79286 inherit pub_methods_classCSegSet"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a4d595a6d8efe6b232513511bfa45074d inherit pub_methods_classCSegSet"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#a4d595a6d8efe6b232513511bfa45074d">get_preferred_reference</a> () const </td></tr>
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<tr class="memitem:a13e0dd72d655c948e1fb85de90a61a1f inherit pub_methods_classCSegSet"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#a13e0dd72d655c948e1fb85de90a61a1f">get_RV_peak</a> () const </td></tr>
<tr class="separator:a13e0dd72d655c948e1fb85de90a61a1f inherit pub_methods_classCSegSet"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a00b837404c4e76a8e22520e88c9dd34c inherit pub_methods_classCSegSet"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#a00b837404c4e76a8e22520e88c9dd34c">rename_base</a> (const std::string &amp;new_base)</td></tr>
<tr class="separator:a00b837404c4e76a8e22520e88c9dd34c inherit pub_methods_classCSegSet"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a86d38b88d922f91b3fc51d7aa0ba29f1 inherit pub_methods_classCSegSet"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#a86d38b88d922f91b3fc51d7aa0ba29f1">set_LV_peak</a> (int peak)</td></tr>
<tr class="separator:a86d38b88d922f91b3fc51d7aa0ba29f1 inherit pub_methods_classCSegSet"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ad13e3bc7b9a7e6d42f9bb425ce44f6a8 inherit pub_methods_classCSegSet"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#ad13e3bc7b9a7e6d42f9bb425ce44f6a8">set_preferred_reference</a> (int value)</td></tr>
<tr class="separator:ad13e3bc7b9a7e6d42f9bb425ce44f6a8 inherit pub_methods_classCSegSet"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a12b94bf034579378b1df09e2df1716b9 inherit pub_methods_classCSegSet"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#a12b94bf034579378b1df09e2df1716b9">set_RV_peak</a> (int peak)</td></tr>
<tr class="separator:a12b94bf034579378b1df09e2df1716b9 inherit pub_methods_classCSegSet"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a7e60c236ecdb3b8b9ba78731b07a5b4a inherit pub_methods_classCSegSet"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCSegSet.html">CSegSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#a7e60c236ecdb3b8b9ba78731b07a5b4a">shift_and_rename</a> (size_t skip, const <a class="el" href="2d_2vector_8hh.html#a1ff708442aa1da9d0b897f04042c7e0c">C2DFVector</a> &amp;shift, const std::string &amp;new_filename_base) const </td></tr>
<tr class="separator:a7e60c236ecdb3b8b9ba78731b07a5b4a inherit pub_methods_classCSegSet"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a1c6c4cdc281062e5245b72a3508495bc inherit pub_methods_classCSegSet"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#a1c6c4cdc281062e5245b72a3508495bc">transform</a> (const <a class="el" href="classC2DTransformation.html">C2DTransformation</a> &amp;t)</td></tr>
<tr class="separator:a1c6c4cdc281062e5245b72a3508495bc inherit pub_methods_classCSegSet"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a9f5f052b804ef0726f760c9cbad0edcb inherit pub_methods_classCSegSet"><td class="memItemLeft" align="right" valign="top">xmlpp::Document *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#a9f5f052b804ef0726f760c9cbad0edcb">write</a> () const </td></tr>
<tr class="separator:a9f5f052b804ef0726f760c9cbad0edcb inherit pub_methods_classCSegSet"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_types_classCSegSet"><td colspan="2" onclick="javascript:toggleInherit('pub_types_classCSegSet')"><img src="closed.png" alt="-"/>&#160;Public Types inherited from <a class="el" href="classCSegSet.html">CSegSet</a></td></tr>
<tr class="memitem:a8dbbd2f1864cfc06135e54d3bd359458 inherit pub_types_classCSegSet"><td class="memItemLeft" align="right" valign="top">typedef std::vector&lt; <a class="el" href="classCSegFrame.html">CSegFrame</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#a8dbbd2f1864cfc06135e54d3bd359458">Frames</a></td></tr>
<tr class="memdesc:a8dbbd2f1864cfc06135e54d3bd359458 inherit pub_types_classCSegSet"><td class="mdescLeft">&#160;</td><td class="mdescRight">convenience typedef for the frames comprising a segmentation set  <a href="#a8dbbd2f1864cfc06135e54d3bd359458">More...</a><br/></td></tr>
<tr class="separator:a8dbbd2f1864cfc06135e54d3bd359458 inherit pub_types_classCSegSet"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>A set of images and its segmentations, related to heart perfusion analysis. </p>
<p>A set of slices containing segmentationinformation as well as the images. </p>

<p>Definition at line <a class="el" href="SegSetWithImages_8hh_source.html#l00039">39</a> of file <a class="el" href="SegSetWithImages_8hh_source.html">SegSetWithImages.hh</a>.</p>
</div><h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
<a class="anchor" id="aad3c2e0954c0b73293f5c4d0b7ae54e4"></a>
<div class="memitem">
<div class="memproto">
      <table class="memname">
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          <td class="memname">CSegSetWithImages::CSegSetWithImages </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
          <td></td>
        </tr>
      </table>
</div><div class="memdoc">

</div>
</div>
<a class="anchor" id="afd1c0ae18b826ef7f1684964c6186832"></a>
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          <td class="memname">CSegSetWithImages::CSegSetWithImages </td>
          <td>(</td>
          <td class="paramtype">const std::string &amp;&#160;</td>
          <td class="paramname"><em>filename</em>, </td>
        </tr>
        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">bool&#160;</td>
          <td class="paramname"><em>ignore_path</em>&#160;</td>
        </tr>
        <tr>
          <td></td>
          <td>)</td>
          <td></td><td></td>
        </tr>
      </table>
</div><div class="memdoc">
<p>Read the segmentation set and load the images </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">filename</td><td>segmentation set </td></tr>
    <tr><td class="paramname">ignore_path</td><td>if <em>true</em> the image reader will ignore the path assosiated with the images, and use the base directory of the segmentation set. </td></tr>
  </table>
  </dd>
</dl>

</div>
</div>
<h2 class="groupheader">Member Function Documentation</h2>
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          <td class="memname"><a class="el" href="classCSegSetWithImages.html">CSegSetWithImages</a> CSegSetWithImages::crop </td>
          <td>(</td>
          <td class="paramtype">const <a class="el" href="BoundingBox_8hh.html#af50d64dcb0b6f0ccdb574f923cf55d8a">C2DIVector</a> &amp;&#160;</td>
          <td class="paramname"><em>start</em>, </td>
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          <td class="paramname"><em>end</em>, </td>
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          <td class="paramtype">const std::string &amp;&#160;</td>
          <td class="paramname"><em>crop_filename_base</em>&#160;</td>
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          <td></td>
          <td>)</td>
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<p>Run acropping on the inout images and correct the segmentation information accordingly </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">start</td><td>upper left corner of the cropping reagion </td></tr>
    <tr><td class="paramname">end</td><td>lower right corner of the cropping reagion </td></tr>
    <tr><td class="paramname">crop_filename_base</td><td>new file name base for the cropped images </td></tr>
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<dl class="section return"><dt>Returns</dt><dd>a new segmentation set with the cropped images and the corrected segmentation information </dd></dl>

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          <td class="memname">const <a class="el" href="2d_2image_8hh.html#a98e18aba33a7a32e91384383348163cf">C2DImageSeries</a>&amp; CSegSetWithImages::get_images </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
          <td> const</td>
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<dl class="section return"><dt>Returns</dt><dd>a vector of the images </dd></dl>

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          <td class="memname">void CSegSetWithImages::save_images </td>
          <td>(</td>
          <td class="paramtype">const std::string &amp;&#160;</td>
          <td class="paramname"><em>root</em></td><td>)</td>
          <td> const</td>
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<p>save the images to their give file names with the given directory as root </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">root</td><td></td></tr>
  </table>
  </dd>
</dl>

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          <td class="memname">void CSegSetWithImages::set_images </td>
          <td>(</td>
          <td class="paramtype">const <a class="el" href="2d_2image_8hh.html#a98e18aba33a7a32e91384383348163cf">C2DImageSeries</a> &amp;&#160;</td>
          <td class="paramname"><em>series</em></td><td>)</td>
          <td></td>
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<p>sets the image series </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">series</td><td></td></tr>
  </table>
  </dd>
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<hr/>The documentation for this class was generated from the following file:<ul>
<li><a class="el" href="SegSetWithImages_8hh_source.html">SegSetWithImages.hh</a></li>
</ul>
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