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<a href="#pub-types">Public Types</a> &#124;
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<div class="title">CSegSet Class Reference<div class="ingroups"><a class="el" href="group__perf.html">Perfusion Analysis</a></div></div>  </div>
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<p>A set of segmentation of a 2D series of perfusion images.  
 <a href="classCSegSet.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="SegSet_8hh_source.html">mia/2d/SegSet.hh</a>&gt;</code></p>
<div class="dynheader">
Inheritance diagram for CSegSet:</div>
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Public Types</h2></td></tr>
<tr class="memitem:a8dbbd2f1864cfc06135e54d3bd359458"><td class="memItemLeft" align="right" valign="top">typedef std::vector&lt; <a class="el" href="classCSegFrame.html">CSegFrame</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#a8dbbd2f1864cfc06135e54d3bd359458">Frames</a></td></tr>
<tr class="memdesc:a8dbbd2f1864cfc06135e54d3bd359458"><td class="mdescLeft">&#160;</td><td class="mdescRight">convenience typedef for the frames comprising a segmentation set  <a href="#a8dbbd2f1864cfc06135e54d3bd359458">More...</a><br/></td></tr>
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Public Member Functions</h2></td></tr>
<tr class="memitem:a1ae3735147ea589307264941b60d6b4a"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#a1ae3735147ea589307264941b60d6b4a">add_frame</a> (const <a class="el" href="classCSegFrame.html">CSegFrame</a> &amp;frame)</td></tr>
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<tr class="memitem:aaf59cc2d8712ccc2746bcdffd2bc9362"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classC2DBoundingBox.html">C2DBoundingBox</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#aaf59cc2d8712ccc2746bcdffd2bc9362">get_boundingbox</a> () const </td></tr>
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<tr class="memitem:a60d1e48d8434c59b4bc843d73e89628a"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="classCSegSet.html#a8dbbd2f1864cfc06135e54d3bd359458">Frames</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#a60d1e48d8434c59b4bc843d73e89628a">get_frames</a> () const </td></tr>
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<tr class="memitem:ad13e3bc7b9a7e6d42f9bb425ce44f6a8"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#ad13e3bc7b9a7e6d42f9bb425ce44f6a8">set_preferred_reference</a> (int value)</td></tr>
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<tr class="memitem:a7e60c236ecdb3b8b9ba78731b07a5b4a"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCSegSet.html">CSegSet</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#a7e60c236ecdb3b8b9ba78731b07a5b4a">shift_and_rename</a> (size_t skip, const <a class="el" href="2d_2vector_8hh.html#a1ff708442aa1da9d0b897f04042c7e0c">C2DFVector</a> &amp;shift, const std::string &amp;new_filename_base) const </td></tr>
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<tr class="memitem:a1c6c4cdc281062e5245b72a3508495bc"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#a1c6c4cdc281062e5245b72a3508495bc">transform</a> (const <a class="el" href="classC2DTransformation.html">C2DTransformation</a> &amp;t)</td></tr>
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<tr class="memitem:a9f5f052b804ef0726f760c9cbad0edcb"><td class="memItemLeft" align="right" valign="top">xmlpp::Document *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegSet.html#a9f5f052b804ef0726f760c9cbad0edcb">write</a> () const </td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>A set of segmentation of a 2D series of perfusion images. </p>
<p>A set of slices containing segmentation information specifically designed for myocardial perfusion image series. </p>

<p>Definition at line <a class="el" href="SegSet_8hh_source.html#l00040">40</a> of file <a class="el" href="SegSet_8hh_source.html">SegSet.hh</a>.</p>
</div><h2 class="groupheader">Member Typedef Documentation</h2>
<a class="anchor" id="a8dbbd2f1864cfc06135e54d3bd359458"></a>
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          <td class="memname">typedef std::vector&lt;<a class="el" href="classCSegFrame.html">CSegFrame</a>&gt; <a class="el" href="classCSegSet.html#a8dbbd2f1864cfc06135e54d3bd359458">CSegSet::Frames</a></td>
        </tr>
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<p>convenience typedef for the frames comprising a segmentation set </p>

<p>Definition at line <a class="el" href="SegSet_8hh_source.html#l00043">43</a> of file <a class="el" href="SegSet_8hh_source.html">SegSet.hh</a>.</p>

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<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
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          <td class="memname">CSegSet::CSegSet </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
          <td></td>
        </tr>
      </table>
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<p>Standard constructor. </p>

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          <td class="memname">CSegSet::CSegSet </td>
          <td>(</td>
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          <td class="paramname"><em>src_filename</em></td><td>)</td>
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<p>Construct the segmentation set by reading from a file </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
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  </table>
  </dd>
</dl>

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<a class="anchor" id="ac6598eb98c3010a40369a9a6d76a9c26"></a>
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          <td class="memname">CSegSet::CSegSet </td>
          <td>(</td>
          <td class="paramtype">const xmlpp::Document &amp;&#160;</td>
          <td class="paramname"><em>node</em></td><td>)</td>
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<p>Construct a segmentation set by reading from a XML document </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">node</td><td>the root node of the XML document </td></tr>
  </table>
  </dd>
</dl>

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<h2 class="groupheader">Member Function Documentation</h2>
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          <td class="memname">void CSegSet::add_frame </td>
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          <td></td>
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<p>Append a segmentation frame </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">frame</td><td></td></tr>
  </table>
  </dd>
</dl>

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          <td class="memname">const <a class="el" href="classC2DBoundingBox.html">C2DBoundingBox</a> CSegSet::get_boundingbox </td>
          <td>(</td>
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<dl class="section return"><dt>Returns</dt><dd>the box of minimal size that includes the segmentation </dd></dl>

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          <td class="memname">const <a class="el" href="classCSegSet.html#a8dbbd2f1864cfc06135e54d3bd359458">Frames</a>&amp; CSegSet::get_frames </td>
          <td>(</td>
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<dl class="section return"><dt>Returns</dt><dd>read-only vector of the segmentation frames </dd></dl>

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          <td class="memname"><a class="el" href="classCSegSet.html#a8dbbd2f1864cfc06135e54d3bd359458">Frames</a>&amp; CSegSet::get_frames </td>
          <td>(</td>
          <td class="paramname"></td><td>)</td>
          <td></td>
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<dl class="section return"><dt>Returns</dt><dd>a reference to the read-write vector of the segmentation frames Changing this vector changes the segmentation set </dd></dl>

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          <td class="memname">int CSegSet::get_LV_peak </td>
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<p>\returns the frame number of the LV peak enhancement (-1 if not set) </p>

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<p>\returns the frame number of the image that should be used as reference frame for time-intensity analysis after motion compensation - if the used motion compensation algorithm provides some (like quasiperiodic, one2many, or serial do). Returns -1 if no values is given. </p>

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<p>\returns the frame number of the RV peak enhancement (-1 if not set) </p>

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          <td class="memname">void CSegSet::rename_base </td>
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          <td class="paramtype">const std::string &amp;&#160;</td>
          <td class="paramname"><em>new_base</em></td><td>)</td>
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<p>Rename the base of the image file names for all frames on a frame by frame basis. </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">new_base</td><td>new base name </td></tr>
  </table>
  </dd>
</dl>

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          <td class="paramtype">int&#160;</td>
          <td class="paramname"><em>peak</em></td><td>)</td>
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<p>Set the frame number of the LV peak enhancement </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">peak</td><td></td></tr>
  </table>
  </dd>
</dl>

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          <td class="paramtype">int&#160;</td>
          <td class="paramname"><em>value</em></td><td>)</td>
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<p>Set the preferred reference frame for this segmentation set. </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">value</td><td></td></tr>
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  </dd>
</dl>

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          <td class="paramtype">int&#160;</td>
          <td class="paramname"><em>peak</em></td><td>)</td>
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<p>Set the frame number of the RV peak enhancement </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">peak</td><td></td></tr>
  </table>
  </dd>
</dl>

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          <td class="memname"><a class="el" href="classCSegSet.html">CSegSet</a> CSegSet::shift_and_rename </td>
          <td>(</td>
          <td class="paramtype">size_t&#160;</td>
          <td class="paramname"><em>skip</em>, </td>
        </tr>
        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">const <a class="el" href="2d_2vector_8hh.html#a1ff708442aa1da9d0b897f04042c7e0c">C2DFVector</a> &amp;&#160;</td>
          <td class="paramname"><em>shift</em>, </td>
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          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">const std::string &amp;&#160;</td>
          <td class="paramname"><em>new_filename_base</em>&#160;</td>
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<p>This function renames the images files, shifts the origin of the segmentation and removes frames from the beginning of the set </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">skip</td><td>number of frames to skipü at the beginning </td></tr>
    <tr><td class="paramname">shift</td><td>new origin of segmentation </td></tr>
    <tr><td class="paramname">new_filename_base</td><td>new file name base </td></tr>
  </table>
  </dd>
</dl>
<dl class="section remark"><dt>Remarks</dt><dd>This function does too many things at once. </dd></dl>

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          <td class="memname">void CSegSet::transform </td>
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          <td class="paramtype">const <a class="el" href="classC2DTransformation.html">C2DTransformation</a> &amp;&#160;</td>
          <td class="paramname"><em>t</em></td><td>)</td>
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<p>Transform the segmentations slice wise by using the given transformation Wroks in-place. </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">t</td><td>tranformation </td></tr>
  </table>
  </dd>
</dl>

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          <td class="memname">xmlpp::Document* CSegSet::write </td>
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          <td class="paramname"></td><td>)</td>
          <td> const</td>
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<p>Write the segmentation information to an XML tree </p>
<dl class="section return"><dt>Returns</dt><dd>root node of xml tree. </dd></dl>

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<hr/>The documentation for this class was generated from the following file:<ul>
<li><a class="el" href="SegSet_8hh_source.html">SegSet.hh</a></li>
</ul>
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