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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<title>CSegFrame Class Reference</title>
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<div class="header">
  <div class="summary">
<a href="#pub-types">Public Types</a> &#124;
<a href="#pub-methods">Public Member Functions</a>  </div>
  <div class="headertitle">
<div class="title">CSegFrame Class Reference<div class="ingroups"><a class="el" href="group__perf.html">Perfusion Analysis</a></div></div>  </div>
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<p>A class to represent one segmented frame in a heart perfusion series.  
 <a href="classCSegFrame.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="SegFrame_8hh_source.html">mia/2d/SegFrame.hh</a>&gt;</code></p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-types"></a>
Public Types</h2></td></tr>
<tr class="memitem:a3c2859398ea9f34f31763e22c3e536dd"><td class="memItemLeft" align="right" valign="top">typedef std::vector&lt; <a class="el" href="classCSegSection.html">CSegSection</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegFrame.html#a3c2859398ea9f34f31763e22c3e536dd">Sections</a></td></tr>
<tr class="memdesc:a3c2859398ea9f34f31763e22c3e536dd"><td class="mdescLeft">&#160;</td><td class="mdescRight">convenience typedef for the sections  <a href="#a3c2859398ea9f34f31763e22c3e536dd">More...</a><br/></td></tr>
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<tr class="memitem:a4539dd42d3576f97248999e19ad2bf0b"><td class="memItemLeft" align="right" valign="top">typedef std::vector&lt; <a class="el" href="classCSegFrame.html#a92a6fd8e8d1dfc3dce63c8ff464ef459">Statistics</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegFrame.html#a4539dd42d3576f97248999e19ad2bf0b">SectionsStats</a></td></tr>
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<tr class="memitem:ad4101bc718ed26e0f4d331b9bd093392"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegFrame.html#ad4101bc718ed26e0f4d331b9bd093392">shift</a> (const <a class="el" href="2d_2vector_8hh.html#a1ff708442aa1da9d0b897f04042c7e0c">C2DFVector</a> &amp;delta, const std::string &amp;cropped_file)</td></tr>
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<tr class="memitem:a1d3bcabae5fb0d75ebaa86ef2a37825c"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegFrame.html#a1d3bcabae5fb0d75ebaa86ef2a37825c">transform</a> (const <a class="el" href="classC2DTransformation.html">C2DTransformation</a> &amp;t)</td></tr>
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<tr class="memitem:a64283e9fc525fb9be04ddbd1c95ac8e6"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCSegFrame.html#a64283e9fc525fb9be04ddbd1c95ac8e6">write</a> (xmlpp::Node &amp;node, int version) const </td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>A class to represent one segmented frame in a heart perfusion series. </p>
<p>This class implements the frame of a myocardial segmentation consisting of six sections CSegsection, the segmentation helper <a class="el" href="classCSegStar.html" title="Helper class for the segmentation of the left heart ventricle myocardium. ">CSegStar</a>, and the name of the corresponding image file. </p>

<p>Definition at line <a class="el" href="SegFrame_8hh_source.html#l00039">39</a> of file <a class="el" href="SegFrame_8hh_source.html">SegFrame.hh</a>.</p>
</div><h2 class="groupheader">Member Typedef Documentation</h2>
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          <td class="memname">typedef std::vector&lt;<a class="el" href="classCSegSection.html">CSegSection</a>&gt; <a class="el" href="classCSegFrame.html#a3c2859398ea9f34f31763e22c3e536dd">CSegFrame::Sections</a></td>
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<p>convenience typedef for the sections </p>

<p>Definition at line <a class="el" href="SegFrame_8hh_source.html#l00042">42</a> of file <a class="el" href="SegFrame_8hh_source.html">SegFrame.hh</a>.</p>

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          <td class="memname">typedef std::vector&lt;<a class="el" href="classCSegFrame.html#a92a6fd8e8d1dfc3dce63c8ff464ef459">Statistics</a>&gt; <a class="el" href="classCSegFrame.html#a4539dd42d3576f97248999e19ad2bf0b">CSegFrame::SectionsStats</a></td>
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<p>convenience typedef for the section statistics vector </p>

<p>Definition at line <a class="el" href="SegFrame_8hh_source.html#l00050">50</a> of file <a class="el" href="SegFrame_8hh_source.html">SegFrame.hh</a>.</p>

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          <td class="memname">typedef std::pair&lt;float, float&gt; <a class="el" href="classCSegFrame.html#a92a6fd8e8d1dfc3dce63c8ff464ef459">CSegFrame::Statistics</a></td>
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<p>convenience typedef for the statistics values </p>
<dl class="section remark"><dt>Remarks</dt><dd>maybe a type with more meaningful elements would be better </dd></dl>

<p>Definition at line <a class="el" href="SegFrame_8hh_source.html#l00047">47</a> of file <a class="el" href="SegFrame_8hh_source.html">SegFrame.hh</a>.</p>

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<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
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          <td>(</td>
          <td class="paramname"></td><td>)</td>
          <td></td>
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          <td>(</td>
          <td class="paramtype">const std::string &amp;&#160;</td>
          <td class="paramname"><em>image</em>, </td>
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          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">const <a class="el" href="classCSegStar.html">CSegStar</a> &amp;&#160;</td>
          <td class="paramname"><em>star</em>, </td>
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          <td></td>
          <td class="paramtype">const <a class="el" href="classCSegFrame.html#a3c2859398ea9f34f31763e22c3e536dd">Sections</a> &amp;&#160;</td>
          <td class="paramname"><em>sections</em>&#160;</td>
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<p>Construct the segmentation frame from </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">image</td><td>image file name </td></tr>
    <tr><td class="paramname">star</td><td><a class="el" href="classCSegStar.html" title="Helper class for the segmentation of the left heart ventricle myocardium. ">CSegStar</a> </td></tr>
    <tr><td class="paramname">sections</td><td>the segmentation sections </td></tr>
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          <td>(</td>
          <td class="paramtype">const xmlpp::Node &amp;&#160;</td>
          <td class="paramname"><em>node</em>, </td>
        </tr>
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          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">int&#160;</td>
          <td class="paramname"><em>version</em>&#160;</td>
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<p>Construct the segmentation frame from a XML root node </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">node</td><td></td></tr>
    <tr><td class="paramname">version</td><td>segmentation set version the node stems from. </td></tr>
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<h2 class="groupheader">Member Function Documentation</h2>
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          <td class="memname">const <a class="el" href="classC2DBoundingBox.html">C2DBoundingBox</a> CSegFrame::get_boundingbox </td>
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<dl class="section return"><dt>Returns</dt><dd>the bounding box enclosing all segmentation sections belonging to thie frame </dd></dl>

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          <td> const</td>
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<dl class="section return"><dt>Returns</dt><dd>proposed brightness correction </dd></dl>

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<dl class="section return"><dt>Returns</dt><dd>proposed contrast correction </dd></dl>

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          <td>(</td>
          <td class="paramtype">const <a class="el" href="classCSegFrame.html">CSegFrame</a> &amp;&#160;</td>
          <td class="paramname"><em>other</em></td><td>)</td>
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<p>Evaluate the Hausdorff distance of this segmentation frame to another </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">other</td><td></td></tr>
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<dl class="section return"><dt>Returns</dt><dd>Hausdorff distance </dd></dl>

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          <td class="memname">const std::string&amp; CSegFrame::get_imagename </td>
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          <td> const</td>
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<dl class="section return"><dt>Returns</dt><dd>the file name of the corresponding image </dd></dl>

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          <td class="memname">size_t CSegFrame::get_nsections </td>
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          <td class="paramname"></td><td>)</td>
          <td> const</td>
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<dl class="section return"><dt>Returns</dt><dd>number of segmented sections </dd></dl>

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          <td class="memname">float CSegFrame::get_quality </td>
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          <td> const</td>
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<dl class="section return"><dt>Returns</dt><dd>slice quality rating </dd></dl>

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          <td class="memname"><a class="el" href="2d_2image_8hh.html#a0cc4b9ad2fea5489bc47d8f9622fd3f9">C2DUBImage</a> CSegFrame::get_section_masks </td>
          <td>(</td>
          <td class="paramtype">const <a class="el" href="2d_2vector_8hh.html#a11b5d262e935234ba1d72bc6423bd2e4">C2DBounds</a> &amp;&#160;</td>
          <td class="paramname"><em>size</em></td><td>)</td>
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<p>Evaluate a mask image based on the segmented sections </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">size</td><td>size of the output image </td></tr>
  </table>
  </dd>
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<dl class="section return"><dt>Returns</dt><dd>an image containing the masks for each section numbered in the storage order of the sections </dd></dl>
<dl class="section remark"><dt>Remarks</dt><dd>If overlap exists between the sections the masks with a higher index overwrite the masks with a lower index. </dd></dl>

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<p>Create the section masks by using the size of the image corresponding to the frame </p>
<dl class="section return"><dt>Returns</dt><dd>the mask image, for details see get_section_masks(const C2DBounds&amp; size). </dd></dl>

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          <td>(</td>
          <td class="paramtype">size_t&#160;</td>
          <td class="paramname"><em>n_sections</em></td><td>)</td>
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<p>Create the section masks by using the size of the image corresponding to the frame. If the number of requested sections is equal to the number of sections stored, this call is equal to <a class="el" href="classCSegFrame.html#a7596320f3ee81d829f16c05aec184bb1">get_section_masks()</a>, Otherwiese, instead of using the sections as defined, evaluate the union of all the sections and then split this union evenly in <em>n_sections</em> starting by the first directional ray and moving clockwiese with the star center as the angular point. </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">n_sections</td><td>number of target sections </td></tr>
  </table>
  </dd>
</dl>
<dl class="section return"><dt>Returns</dt><dd>the mask image, for details see get_section_masks(const C2DBounds&amp; size). </dd></dl>

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<dl class="section return"><dt>Returns</dt><dd>a read-only reference to the segmentation sections </dd></dl>

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          <td> const</td>
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<dl class="section return"><dt>Returns</dt><dd>the star of the LV contained in this frame </dd></dl>

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          <td class="paramname"><em>mask</em></td><td>)</td>
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<p>Evaluate inetnsity mean and variation of the image data for the registions defined by the given mask image. </p>
<dl class="params"><dt>Parameters</dt><dd>
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<dl class="section return"><dt>Returns</dt><dd>the statustics </dd></dl>

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          <td>(</td>
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          <td class="paramname"><em>n_sections</em></td><td>)</td>
          <td> const</td>
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<p>Evaluate inetnsity mean and variation of the image data for the registions defined the get_section_masks(size_t n_sections) method. </p>
<dl class="params"><dt>Parameters</dt><dd>
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    <tr><td class="paramname">n_sections</td><td></td></tr>
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<dl class="section return"><dt>Returns</dt><dd>the statustics </dd></dl>

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          <td>(</td>
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          <td class="paramname"><em>t</em></td><td>)</td>
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<p>transform the frame segmentation by the inverse of the given transformation </p>
<dl class="params"><dt>Parameters</dt><dd>
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    <tr><td class="paramname">t</td><td></td></tr>
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          <td class="memname">void CSegFrame::rename_base </td>
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          <td class="paramname"><em>new_base</em></td><td>)</td>
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<p>rename the file name base of the image according to sed -e "s/.*[^0-9]\([0-9]*\..*\)/$new_base\1/" </p>
<dl class="params"><dt>Parameters</dt><dd>
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    <tr><td class="paramname">new_base</td><td></td></tr>
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  </dd>
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          <td class="memname">void CSegFrame::set_image </td>
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          <td class="paramname"><em>image</em></td><td>)</td>
          <td></td>
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<p>Set the image corresponding to the segmentation frame </p>
<dl class="params"><dt>Parameters</dt><dd>
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    <tr><td class="paramname">image</td><td></td></tr>
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  </dd>
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          <td class="paramname"><em>name</em></td><td>)</td>
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<p>set the file name of the corresponding image </p>
<dl class="params"><dt>Parameters</dt><dd>
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    <tr><td class="paramname">name</td><td></td></tr>
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  </dd>
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          <td>(</td>
          <td class="paramtype">const <a class="el" href="2d_2vector_8hh.html#a1ff708442aa1da9d0b897f04042c7e0c">C2DFVector</a> &amp;&#160;</td>
          <td class="paramname"><em>delta</em>, </td>
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          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">const std::string &amp;&#160;</td>
          <td class="paramname"><em>cropped_file</em>&#160;</td>
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<p>Shift the segmentation frame and change the file name to the new name corresponding to the shifted image </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">delta</td><td>translation </td></tr>
    <tr><td class="paramname">cropped_file</td><td>new image file name </td></tr>
  </table>
  </dd>
</dl>

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        <tr>
          <td class="memname">void CSegFrame::transform </td>
          <td>(</td>
          <td class="paramtype">const <a class="el" href="classC2DTransformation.html">C2DTransformation</a> &amp;&#160;</td>
          <td class="paramname"><em>t</em></td><td>)</td>
          <td></td>
        </tr>
      </table>
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<p>transform the frame segmentation by a given transformation </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">t</td><td></td></tr>
  </table>
  </dd>
</dl>

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        <tr>
          <td class="memname">void CSegFrame::write </td>
          <td>(</td>
          <td class="paramtype">xmlpp::Node &amp;&#160;</td>
          <td class="paramname"><em>node</em>, </td>
        </tr>
        <tr>
          <td class="paramkey"></td>
          <td></td>
          <td class="paramtype">int&#160;</td>
          <td class="paramname"><em>version</em>&#160;</td>
        </tr>
        <tr>
          <td></td>
          <td>)</td>
          <td></td><td> const</td>
        </tr>
      </table>
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<p>Append the segmentation frame to a XML node </p>
<dl class="params"><dt>Parameters</dt><dd>
  <table class="params">
    <tr><td class="paramname">node</td><td>parent node to append the frame description to </td></tr>
    <tr><td class="paramname">version</td><td>segmentation set file version that should be used to save the data </td></tr>
  </table>
  </dd>
</dl>

</div>
</div>
<hr/>The documentation for this class was generated from the following file:<ul>
<li><a class="el" href="SegFrame_8hh_source.html">SegFrame.hh</a></li>
</ul>
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